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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA662
Library SS
(Link to library)
Clone ID SSA662
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U07966-1
Original site URL
Representative seq. ID SSA662P
(Link to Original site)
Representative DNA sequence 
>SSA662 (SSA662Q) /CSM/SS/SSA6-C/SSA662Q.Seq.d/
GTCTTTGTTAAAAACTTATCGTCACAATTCAAGTTTTTTTTTTTTTTTTTTTTTTATTTC
ACTCTCTTTTTTTCTATTTTTTTATTTTTTTAAATAGTTCTTTTTTATATAAAAGTAAAA
GAAAACAATAAAATAAATAAATAAATAAACAAAACAAAGTAAAATAACCGCAAAAATTAA
AAAATAAAATAATAAAAAAAATTTTTTTTTTAAAAAATTTAAAAAATTAAAAAAACTACA
ACAGTAACAGATTTTTTAAAAGTGTAGATAATATAACAATAAACATATTCAATTGTACAC
TACTCATTATATTGACACAAATATAAACATCACCAATACAGATCAATAAGCATAATTGTA
GATAATAATAATAATAACAAAAATATAAAANATAAAAATAAAAACTACTAAAAACAAATA
ATAAAACTATAAATATAAAAACAAAAATAATATACATATATATATATATAXXXXXXXXXX
AATAATTGGTTACCACCACCAGCTACTGTTAAATTTGAACAAATTTTACCATTTATGAAA
GAAGGTGCAGAATGTTTAGCTGGTATTAATTCAATTATACCCTCATATATTAATGGAACA
TCATCATTTACAGCAACTTCATGTACTTATGCACCAGATGCAACCATTACTTGTGATGAT
TGTCATAATGCATGGATTGTTATTATTTTATATATGACTATCAATATCATTTATAATATT
TTCATTTTGTTAGTATTGAAACATGCAGGTGCAACCGTTTATTCAATTGCCAATACCCTT
CGTTTACCATTGACCAATATTGTTTTCTCAATTCATTTCATTATGGGCTCTGCTGTATCT
CCATTCTCTGGATTGTCCGTTGCGGGTCTAGTCATTATTTTAGTGGGTCTAGGTGGTTAT
CGTGTTGGTTCAATGATCAAACAAAAGAAAGCTGCTGCCGCTGGTGGTGCTATTAAAGTT
ATACCATCGTATGGACCTGCAGGTATGGATAATATTATACCAGTTCAAAAAGAATATATT
GAACCAAAGAGTCAAGCTCACTTAAGAAATCAATTCTTTGGTAAATTAGGTATCAATGTT
CCTGAGGCAAGATATAGAGCTGCTAATAATAAAAATTATGGTGATGCTTAAAAAAAAAAA
AAAA
sequence update 1998. 7.24
Translated Amino Acid sequence 
lc*klivtiqvfffffflfhslffyffiflnssflykskrkq*nk*inkqnkvk*pqklk
nkiikkifflknlkn*knynsnrffksvdnitinifnctlliiltqi*tspiqinkhncr
*****qkykx*k*KLLKTNNKTINIKTKIIYIYIYI---

---NNWLPPPATVKFEQILPFMKEGAECLAGINSIIPSYINGTSSFTATSCTYAPDATIT
CDDCHNAWIVIILYMTINIIYNIFILLVLKHAGATVYSIANTLRLPLTNIVFSIHFIMGS
AVSPFSGLSVAGLVIILVGLGGYRVGSMIKQKKAAAAGGAIKVIPSYGPAGMDNIIPVQK
EYIEPKSQAHLRNQFFGKLGINVPEARYRAANNKNYGDA*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vfvknlssqfkfffffffyftlffsiflff*ivlfyikvkennkink*inktk*nnrkn*
kik**kkfff*ki*kikktttvtdflkv*ii*q*tysivhysly*hkykhhqyrsisiiv
dnnnnnknikxknkny*kqiikl*i*kqk*ytyiyi---

---NNWLPPPATVKFEQILPFMKEGAECLAGINSIIPSYINGTSSFTATSCTYAPDATIT
CDDCHNAWIVIILYMTINIIYNIFILLVLKHAGATVYSIANTLRLPLTNIVFSIHFIMGS
AVSPFSGLSVAGLVIILVGLGGYRVGSMIKQKKAAAAGGAIKVIPSYGPAGMDNIIPVQK
EYIEPKSQAHLRNQFFGKLGINVPEARYRAANNKNYGDA*kkkk

Frame B:
sllktyrhnssfffffffislsfflffyffk*fffi*k*kktik*ink*tkqskitakik
k*nnkknfffkkfkklkklqq*qif*kcr*ynnkhiqlytthyidtninitntdq*a*l*
iiiiitki*xikikttknk**nykyknknnihiyiy---

---iigyhhqlllnlnkfyhl*kkvqnv*lvliqlyphilmehhhlqqlhvlmhqmqpll
vmivimhglllfyi*lsisfiifsfc*y*nmqvqpfiqlpipfvyh*pilfsqfislwal
lylhsldcplrv*slf*wv*vvivlvq*snkrkllplvvllklyhrmdlqvwiilyqfkk
nilnqrvklt*einslvn*vsmflrqdielliikimvmlkkkkk

Frame C:
lc*klivtiqvfffffflfhslffyffiflnssflykskrkq*nk*inkqnkvk*pqklk
nkiikkifflknlkn*knynsnrffksvdnitinifnctlliiltqi*tspiqinkhncr
*****qkykx*k*KLLKTNNKTINIKTKIIYIYIYI---

---*lvtttsyc*i*tnftiyerrcrmfswy*fnytliy*wniiiysnfmylctrcnhyl
**ls*cmdcyyfiydyqyhl*yfhfvsietcrcnrlfncqypsftidqycflnsfhyglc
cisilwivrcgsshyfsgsrwlscwfndqtkesccrwwcy*sytivwtcryg*yytsskr
iy*tkessslkksilw*iryqcs*gki*sc***klw*clkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA662 (SSA662Q) /CSM/SS/SSA6-C/SSA662Q.Seq.d/                       1287   0.0
SSG209 (SSG209Q) /CSM/SS/SSG2-A/SSG209Q.Seq.d/                       1193   0.0
SFI792 (SFI792Q) /CSM/SF/SFI7-D/SFI792Q.Seq.d/                       1176   0.0
SLB631 (SLB631Q) /CSM/SL/SLB6-B/SLB631Q.Seq.d/                        959   0.0
SSB404 (SSB404Q) /CSM/SS/SSB4-A/SSB404Q.Seq.d/                        946   0.0
SSF486 (SSF486Q) /CSM/SS/SSF4-D/SSF486Q.Seq.d/                        210   3e-53
SSF504 (SSF504Q) /CSM/SS/SSF5-A/SSF504Q.Seq.d/                        174   2e-42
SSF794 (SSF794Q) /CSM/SS/SSF7-D/SSF794Q.Seq.d/                        172   8e-42
SSA249 (SSA249Q) /CSM/SS/SSA2-C/SSA249Q.Seq.d/                         40   0.073
VHI752 (VHI752Q) /CSM/VH/VHI7-C/VHI752Q.Seq.d/                         38   0.29
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF317500|AF317500.1 Dictyostelium discoideum strain AX4 putative transporter protein SSA662 (ssa662) mRNA, complete cds.  1267  0.0  4
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.  1164  0.0  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.  1164  0.0  5
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    68  3e-19  8
BD193411|BD193411.1 Enterococcus faecialis polynucleotides and polypeptides.    46  0.96  1
AE016953|AE016953.1 Enterococcus faecalis V583, section 7 of 11 of the complete genome.    46  0.96  1
AC026382|AC026382.8 Mus musculus clone RP23-246G10, WORKING DRAFT SEQUENCE, 19 unordered pieces.    46  0.96  1
AL353694|AL353694.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP3-401E20.    46  0.96  1
AZ684750|AZ684750.1 ENTLQ06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.96  1
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36  1.1  10
dna update 2003. 7.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538353_53(BX538353|pid:none) Cryptosporidium parvum chromosome...    59   3e-07
CR940348_735(CR940348|pid:none) Theileria annulata strain Ankara...    46   0.002
EU968453_1(EU968453|pid:none) Zea mays clone 320999 hypothetical...    46   0.002
EU333967_1(EU333967|pid:none) Plasmodium vivax isolate MCQR1 put...    46   0.003
EU333971_1(EU333971|pid:none) Plasmodium vivax isolate MCQS3 put...    46   0.003
EU333972_1(EU333972|pid:none) Plasmodium vivax isolate MCQS8 put...    44   0.008
AF314646_1(AF314646|pid:none) Plasmodium knowlesi putative trans...    43   0.018
AM910983_71(AM910983|pid:none) Plasmodium knowlesi strain H chro...    43   0.018
AC136507_22(AC136507|pid:none) Medicago truncatula clone mth2-24...    40   0.12
AF314645_1(AF314645|pid:none) Plasmodium berghei putative transp...    40   0.15
protein update 2009. 6. 8
PSORT 

 psg: 0.64  gvh: 0.37  alm: 0.25  top: 0.87  tms: 0.13  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSA662 is end
5' end seq. ID SSA662F
5' end seq. 
>SSA662F.Seq
GTCTTTGTTAAAAACTTATCGTCACAATTCAAGTTTTTTTTTTTTTTTTTTTTTTATTTC
ACTCTCTTTTTTTCTATTTTTTTATTTTTTTAAATAGTTCTTTTTTATATAAAAGTAAAA
GAAAACAATAAAATAAATAAATAAATAAACAAAACAAAGTAAAATAACCGCAAAAATTAA
AAAATAAAATAATAAAAAAAATTTTTTTTTTAAAAAATTTAAAAAATTAAAAAAACTACA
ACAGTAACAGATTTTTTAAAAGTGTAGATAATATAACAATAAACATATTCAATTGTACAC
TACTCATTATATTGACACAAATATAAACATCACCAATACAGATCAATAAGCATAATTGTA
GATAATAATAATAATAACAAAAATATAAAANATAAAAATAAAAACTACTAAAAACAAATA
ATAAAACTATAAATATAAAAACAAAAATAATATACATATATATATATATA----------
Length of 5' end seq. 470
3' end seq. ID SSA662Z
3' end seq. 
>SSA662Z.Seq
----------AATAATTGGTTACCACCACCAGCTACTGTTAAATTTGAACAAATTTTACC
ATTTATGAAAGAAGGTGCAGAATGTTTAGCTGGTATTAATTCAATTATACCCTCATATAT
TAATGGAACATCATCATTTACAGCAACTTCATGTACTTATGCACCAGATGCAACCATTAC
TTGTGATGATTGTCATAATGCATGGATTGTTATTATTTTATATATGACTATCAATATCAT
TTATAATATTTTCATTTTGTTAGTATTGAAACATGCAGGTGCAACCGTTTATTCAATTGC
CAATACCCTTCGTTTACCATTGACCAATATTGTTTTCTCAATTCATTTCATTATGGGCTC
TGCTGTATCTCCATTCTCTGGATTGTCCGTTGCGGGTCTAGTCATTATTTTAGTGGGTCT
AGGTGGTTATCGTGTTGGTTCAATGATCAAACAAAAGAAAGCTGCTGCCGCTGGTGGTGC
TATTAAAGTTATACCATCGTATGGACCTGCAGGTATGGATAATATTATACCAGTTCAAAA
AGAATATATTGAACCAAAGAGTCAAGCTCACTTAAGAAATCAATTCTTTGGTAAATTAGG
TATCAATGTTCCTGAGGCAAGATATAGAGCTGCTAATAATAAAAATTATGGTGATGCTTA
AAAAAAAAAAAAAA
Length of 3' end seq. 664
Connected seq. ID SSA662P
Connected seq. 
>SSA662P.Seq
GTCTTTGTTAAAAACTTATCGTCACAATTCAAGTTTTTTTTTTTTTTTTTTTTTTATTTC
ACTCTCTTTTTTTCTATTTTTTTATTTTTTTAAATAGTTCTTTTTTATATAAAAGTAAAA
GAAAACAATAAAATAAATAAATAAATAAACAAAACAAAGTAAAATAACCGCAAAAATTAA
AAAATAAAATAATAAAAAAAATTTTTTTTTTAAAAAATTTAAAAAATTAAAAAAACTACA
ACAGTAACAGATTTTTTAAAAGTGTAGATAATATAACAATAAACATATTCAATTGTACAC
TACTCATTATATTGACACAAATATAAACATCACCAATACAGATCAATAAGCATAATTGTA
GATAATAATAATAATAACAAAAATATAAAANATAAAAATAAAAACTACTAAAAACAAATA
ATAAAACTATAAATATAAAAACAAAAATAATATACATATATATATATATA----------
AATAATTGGTTACCACCACCAGCTACTGTTAAATTTGAACAAATTTTACCATTTATGAAA
GAAGGTGCAGAATGTTTAGCTGGTATTAATTCAATTATACCCTCATATATTAATGGAACA
TCATCATTTACAGCAACTTCATGTACTTATGCACCAGATGCAACCATTACTTGTGATGAT
TGTCATAATGCATGGATTGTTATTATTTTATATATGACTATCAATATCATTTATAATATT
TTCATTTTGTTAGTATTGAAACATGCAGGTGCAACCGTTTATTCAATTGCCAATACCCTT
CGTTTACCATTGACCAATATTGTTTTCTCAATTCATTTCATTATGGGCTCTGCTGTATCT
CCATTCTCTGGATTGTCCGTTGCGGGTCTAGTCATTATTTTAGTGGGTCTAGGTGGTTAT
CGTGTTGGTTCAATGATCAAACAAAAGAAAGCTGCTGCCGCTGGTGGTGCTATTAAAGTT
ATACCATCGTATGGACCTGCAGGTATGGATAATATTATACCAGTTCAAAAAGAATATATT
GAACCAAAGAGTCAAGCTCACTTAAGAAATCAATTCTTTGGTAAATTAGGTATCAATGTT
CCTGAGGCAAGATATAGAGCTGCTAATAATAAAAATTATGGTGATGCTTAAAAAAAAAAA
AAAA
Length of connected seq. 1134
Full length Seq ID -
Full length Seq. -
Length of full length seq. -