>SSA660 (SSA660Q) /CSM/SS/SSA6-C/SSA660Q.Seq.d/
AAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGACGATAATAATATTATTATTTGTATC
ATTATTTGTAACATTTGTTTTATCACAAATACCAGATAATGATCCAGAATTATGTCAACA
AAGAATTCAAAGAGAGGATTGTCCACAAACACCAGTACCATGGGGAACATTCAATGACAA
TGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTT
CTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTACAACTGGTTT
AAATTATACAGCAGAATATGATGCTTTCTTTGAAGTAGGAAATGGTACATTACCAAATAT
CATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGT
TCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTA
TATGGGAACAATTAATXXXXXXXXXX

KIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPQTPVPWGTFNDN
DEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEVGNGTLPNI
INVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTI---

Frame A:
kn*nkrkknekddnniiiciiicnicfitntr**srimstknskrglstntstmgniq*q
*rnrsllyastsfrssfwkflw*vgwisfsnwfl*pynwfklysri*cfl*srkwyitky
hkcrw*r*tfmv*cwyplycsih**nllg*khlfncfknlygnn*---


Frame B:
KIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPQTPVPWGTFNDN
DEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEVGNGTLPNI
INVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTI---


Frame C:
klk*kkkk*kgr**yyylyhyl*hlfyhkyqimiqnyvnkefkerivhkhqyhgehsmtm
tkskstickhqfskqfleislvswvdiiqqlvsmtlqlv*iiqqnmmlslk*emvhyqis
*msmvkmnfygvmlvsfvlfhtlmkligiktsiqllqkliweql---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        920   0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        920   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        920   0.0
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        920   0.0
SSA660 (SSA660Q) /CSM/SS/SSA6-C/SSA660Q.Seq.d/                        920   0.0
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        892   0.0
VFH286 (VFH286Q) /CSM/VF/VFH2-D/VFH286Q.Seq.d/                        890   0.0
SSB231 (SSB231Q) /CSM/SS/SSB2-B/SSB231Q.Seq.d/                        821   0.0
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        769   0.0
SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/                        706   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   920  0.0  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           36  0.046  6
AC133307|AC133307.2 Rattus norvegicus clone CH230-269I2, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48  0.10  1
AC126501|AC126501.4 Rattus norvegicus clone CH230-206K3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.10  1
BH334420|BH334420.1 CH230-110K10.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-110K10, DNA sequence.    48  0.10  1
AZ179765|AZ179765.1 SP_0166_B1_A11_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=166 Col=21 Row=B, DNA sequence.    48  0.10  1
BH318036|BH318036.1 CH230-196J14.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-196J14, DNA sequence.    48  0.10  1
BX470175|BX470175.6 Zebrafish DNA sequence from clone DKEY-228K17 in linkage group 18.    44  0.32  6
AF251284|AF251284.1 Plasmodium falciparum RAD3-like DNA helicase (rad3) gene, complete cds.    36  0.40  2
BX323873|BX323873.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-133L21.    46  0.41  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   299   3e-80
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   299   3e-80
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    79   8e-14
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...    79   8e-14
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...    79   8e-14
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    77   3e-13
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    77   3e-13
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    77   3e-13
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    77   3e-13
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    76   4e-13

 psg: 0.99  gvh: 0.86  alm: 0.46  top: -0.13  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSA660 is exc

>SSA660F.Seq
AAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGACGATAATAATATTATTATTTGTATC
ATTATTTGTAACATTTGTTTTATCACAAATACCAGATAATGATCCAGAATTATGTCAACA
AAGAATTCAAAGAGAGGATTGTCCACAAACACCAGTACCATGGGGAACATTCAATGACAA
TGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTT
CTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTACAACTGGTTT
AAATTATACAGCAGAATATGATGCTTTCTTTGAAGTAGGAAATGGTACATTACCAAATAT
CATAAATGTCGATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGT
TCCATACATTAATGAAACTTATTGGGATAAAAACATCTATTCAACTGCTTCAAAAACTTA
TATGGGAACAATTAAT----------