>SSA659 (SSA659Q) /CSM/SS/SSA6-C/SSA659Q.Seq.d/
CAAAGGATCAATTAAGTCAACTTTGTGATCAACTTCAACAAACAGATCTCAACATCTTGG
AGCAATTACAATTCGATAAGAAATATGAACGTAATGTAGGTCTATCAGCTTTTAGACATT
GGATAAGTGAATTCACTTGGAGAAAATATTTAGATTCTGTACCAGAGGTATTGAAGAGAT
TAAATTCTTTCCGTACAACCTCTGAAGATCAACTCTATCAAATTAGACAACAATTAGAGA
GAACCAATGCCGTAACATTACGTCAAATTGCAAACTCTTACGTATCAATAGAGTTTATTC
AATGCATTGAAAAATTGGTCACCCGTACACTCGAAGGTAATCCATCATTAAATGGTCAAA
CTTTAGAAGANGAGAAATCTCAAGATGAAACCGGTGATTGGTATGATCACAATGGTAAAC
CAATACTATTGTTGAACGATGAAAAATTGGTCACTTTTTATGATAATAAACTCTATGGTG
GTCAACAATTTGAAAGATTATTAACTGAATTXXXXXXXXXX

KDQLSQLCDQLQQTDLNILEQLQFDKKYERNVGLSAFRHWISEFTWRKYLDSVPEVLKRL
NSFRTTSEDQLYQIRQQLERTNAVTLRQIANSYVSIEFIQCIEKLVTRTLEGNPSLNGQT
LEXEKSQDETGDWYDHNGKPILLLNDEKLVTFYDNKLYGGQQFERLLTE---

Frame A:
qrin*vnfvinfnkqistswsnynsirnmnvm*vyqlldig*vnslgeni*ilyqry*rd
*ilsvqplkinsikldnn*repmp*hyvklqtltyq*slfnalknwspvhskvihh*mvk
l*kxrnlkmkpvigmitmvnqyyc*tmknwslfmiinsmvvnnlkdy*ln---


Frame B:
kgsikstl*ststnrsqhlgaitir*ei*t*crsisf*tldk*ihlekifrfctrgieei
kffpynl*rstlsn*ttirenqcrnitsnckllrinrvysmh*kighpytrr*siikwsn
frrxeisr*nr*lv*sqw*tntiver*kighfl***tlwwsti*kiin*---


Frame C:
KDQLSQLCDQLQQTDLNILEQLQFDKKYERNVGLSAFRHWISEFTWRKYLDSVPEVLKRL
NSFRTTSEDQLYQIRQQLERTNAVTLRQIANSYVSIEFIQCIEKLVTRTLEGNPSLNGQT
LEXEKSQDETGDWYDHNGKPILLLNDEKLVTFYDNKLYGGQQFERLLTE---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA659 (SSA659Q) /CSM/SS/SSA6-C/SSA659Q.Seq.d/                       1007   0.0
SLF172 (SLF172Q) /CSM/SL/SLF1-C/SLF172Q.Seq.d/                        242   4e-63
SLB233 (SLB233Q) /CSM/SL/SLB2-B/SLB233Q.Seq.d/                         58   1e-07
VFN325 (VFN325Q) /CSM/VF/VFN3-B/VFN325Q.Seq.d/                         36   0.51
VFM870 (VFM870Q) /CSM/VF/VFM8-C/VFM870Q.Seq.d/                         36   0.51
VFI594 (VFI594Q) /CSM/VF/VFI5-D/VFI594Q.Seq.d/                         36   0.51
VFI345 (VFI345Q) /CSM/VF/VFI3-B/VFI345Q.Seq.d/                         36   0.51
SSG785 (SSG785Q) /CSM/SS/SSG7-D/SSG785Q.Seq.d/                         36   0.51
SSG591 (SSG591Q) /CSM/SS/SSG5-D/SSG591Q.Seq.d/                         36   0.51
SLG177 (SLG177Q) /CSM/SL/SLG1-D/SLG177Q.Seq.d/                         36   0.51

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC130127|AC130127.2 Rattus norvegicus clone CH230-214E13, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  1.1  2
AL583858|AL583858.9 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-78J11.    44  1.7  1
AC012131|AC012131.5 Homo sapiens clone RP11-5E11, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44  1.7  1
AF547983|AF547983.1 Schizosaccharomyces japonicus mitochondrial DNA, complete genome.    40  6.1  3
AC096266|AC096266.6 Rattus norvegicus clone CH230-82A19, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  6.6  1
AC123180|AC123180.4 Rattus norvegicus clone CH230-249D12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  6.6  1
AC083775|AC083775.2 Homo sapiens chromosome 7 clone RP11-776N22 map 7, WORKING DRAFT SEQUENCE, 48 unordered pieces.    42  6.6  1
AC141205|AC141205.3 Rattus norvegicus clone CH230-374I5, WORKING DRAFT SEQUENCE, 22 unordered pieces.    42  6.6  1
AC110290|AC110290.1 Homo sapiens chromosome 15 clone CTD-2304B18 map 15, LOW-PASS SEQUENCE SAMPLING.    42  6.6  1
AC127944|AC127944.2 Rattus norvegicus clone CH230-340O16, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  6.6  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_36(AC116982|pid:none) Dictyostelium discoideum chromoso...    57   3e-07
AY212885_1(AY212885|pid:none) Arabidopsis thaliana dynamin-like ...    54   3e-06
AB426136_1(AB426136|pid:none) Physcomitrella patens PpDRP5B-1 ge...    53   5e-06
AB182156_1(AB182156|pid:none) Physcomitrella patens subsp. paten...    53   5e-06
BT033550_1(BT033550|pid:none) Zea mays full-length cDNA clone ZM...    48   1e-04
AB426138_1(AB426138|pid:none) Physcomitrella patens PpDRP5B-2 ge...    47   4e-04
AC186755_23(AC186755|pid:none) Musa balbisiana clone MBP_91N22, ...    41   0.015
BT062745_1(BT062745|pid:none) Zea mays full-length cDNA clone ZM...    41   0.015
AM483765_2(AM483765|pid:none) Vitis vinifera contig VV78X210202....    41   0.020
CP000109_1502(CP000109|pid:none) Thiomicrospira crunogena XCL-2,...    35   1.1

 psg: 0.75  gvh: 0.32  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSA659 is cyt

>SSA659F.Seq
CAAAGGATCAATTAAGTCAACTTTGTGATCAACTTCAACAAACAGATCTCAACATCTTGG
AGCAATTACAATTCGATAAGAAATATGAACGTAATGTAGGTCTATCAGCTTTTAGACATT
GGATAAGTGAATTCACTTGGAGAAAATATTTAGATTCTGTACCAGAGGTATTGAAGAGAT
TAAATTCTTTCCGTACAACCTCTGAAGATCAACTCTATCAAATTAGACAACAATTAGAGA
GAACCAATGCCGTAACATTACGTCAAATTGCAAACTCTTACGTATCAATAGAGTTTATTC
AATGCATTGAAAAATTGGTCACCCGTACACTCGAAGGTAATCCATCATTAAATGGTCAAA
CTTTAGAAGANGAGAAATCTCAAGATGAAACCGGTGATTGGTATGATCACAATGGTAAAC
CAATACTATTGTTGAACGATGAAAAATTGGTCACTTTTTATGATAATAAACTCTATGGTG
GTCAACAATTTGAAAGATTATTAACTGAATT----------