SSA652
Library SS
(Link to library)
Clone ID SSA652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02361-1
Original site URL
Representative seq. ID SSA652P
(Link to Original site)
Representative DNA sequence
>SSA652 (SSA652Q) /CSM/SS/SSA6-C/SSA652Q.Seq.d/
AATTTATTGAAAATGATAAAAAAAGAATTTTAGAAGATAATCAAAGACAACAACAACAGC
ATCATCACCAACATCAAAGACAACAACAAGAACAACAACAAAATAATGAAGAATTTGTAA
CACAAACACCAGAACAAACATCAAGACAACATCCAACATTACAGCAATTACAAGAAGAAC
AAGCAAGATTACAAGAATTACAAGAACAACAACAACAACAACAACAACAACAACAAAATC
CAAAAGAAACTCGTCAACAAGAGGAATTACAAATTCAACAAAACCAACAATGGTTACAAG
AACAATTAACTCGTCAACAAGAAGAATTGAAACTTCAACAAGAGGAATTAAAACGTCAAC
AAGAGATTGATCATCAACGTCGTTTAGAATTTGAACAAGAATTGGAGAAATTTAAAAAAG
ATCAAGCTGAAAGAGATGCAAGAGATCAAAAAGAGAAACAAGAAAGAGAAGCAAGAGAAC
AAAAAGAGAAACAAGAGAGAGAAGAAAAAGAGAAACAAGAAAAGGAGGAGAAGGAAAGAX
XXXXXXXXXAAAGATAAACAAAGACAAAATTCTTCACCTGCATTNTCCTCAAATGATGTT
ACTACTGGTGGCGCTTCTGATGGTGGTATAGTTATTCATGTACGTGAACCATCATCAGAA
GGTATCTCTGATTCTTTGGCCGATGAAATATTGGGTTTTCTCAATCATTTAATTCATGAT
CGTATACCTTCTCGTAATCAACCAAAAGAAGACTCATTTGATAATATCCCAAACACTGAA
GATACTTCAAATCCTGAATTATCACCAATTTTAAAT
sequence update 1998. 7.24
Translated Amino Acid sequence
FIENDKKRILEDNQRQQQQHHHQHQRQQQEQQQNNEEFVTQTPEQTSRQHPTLQQLQEEQ
ARLQELQEQQQQQQQQQQNPKETRQQEELQIQQNQQWLQEQLTRQQEELKLQQEELKRQQ
EIDHQRRLEFEQELEKFKKDQAERDARDQKEKQEREAREQKEKQEREEKEKQEKEEKER-
--

---KDKQRQNSSPAXSSNDVTTGGASDGGIVIHVREPSSEGISDSLADEILGFLNHLIHD
RIPSRNQPKEDSFDNIPNTEDTSNPELSPILN


Translated Amino Acid sequence (All Frames)
Frame A:
nllkmikkef*kiikdnnnsiitnikdnnknnnkimknl*hkhqnkhqdniqhysnykkn
kqdyknyknnnnnnnnnnkiqkklvnkrnykfnktnngyknn*lvnkkn*nfnkrn*nvn
krliinvv*nlnknwrnlkkiklkemqeikkrnkkekqenkkrnkrekkkrnkkrrrrk-
--

---KDKQRQNSSPAXSSNDVTTGGASDGGIVIHVREPSSEGISDSLADEILGFLNHLIHD
RIPSRNQPKEDSFDNIPNTEDTSNPELSPILN

Frame B:
iy*k**kknfrr*skttttassptsktttrtttk**ricntntrtnikttsnitaitrrt
skitritrttttttttttkskrnsstrgitnstkptmvtrtinsstrrietstrgiktst
rd*sstsfri*trigei*krss*krckrskretrkrskrtkretrerrkretrkggegk-
--

---kinkdkilhlhxpqmmlllvallmvv*lfmyvnhhqkvslilwpmkywvfsii*fmi
vyllvinqkkthliisqtlkilqilnyhqf*

Frame C:
FIENDKKRILEDNQRQQQQHHHQHQRQQQEQQQNNEEFVTQTPEQTSRQHPTLQQLQEEQ
ARLQELQEQQQQQQQQQQNPKETRQQEELQIQQNQQWLQEQLTRQQEELKLQQEELKRQQ
EIDHQRRLEFEQELEKFKKDQAERDARDQKEKQEREAREQKEKQEREEKEKQEKEEKER-
--

---r*tktkfftcixlk*cyywwrf*wwysysct*tiirryl*ffgr*nigfsqsfns*s
ytfs*stkrrli**ypkh*ryfks*iitnfk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA652 (SSA652Q) /CSM/SS/SSA6-C/SSA652Q.Seq.d/ 523 e-147
AFD309 (AFD309Q) /CSM/AF/AFD3-A/AFD309Q.Seq.d/ 478 e-134
SFH290 (SFH290Q) /CSM/SF/SFH2-D/SFH290Q.Seq.d/ 373 e-102
SFD691 (SFD691Q) /CSM/SF/SFD6-D/SFD691Q.Seq.d/ 351 1e-95
AFA359 (AFA359Q) /CSM/AF/AFA3-C/AFA359Q.Seq.d/ 345 7e-94
AFF747 (AFF747Q) /CSM/AF/AFF7-B/AFF747Q.Seq.d/ 307 1e-82
SLK426 (SLK426Q) /CSM/SL/SLK4-B/SLK426Q.Seq.d/ 46 8e-04
SLH282 (SLH282Q) /CSM/SL/SLH2-D/SLH282Q.Seq.d/ 46 8e-04
SLG793 (SLG793Q) /CSM/SL/SLG7-D/SLG793Q.Seq.d/ 46 8e-04
SLF288 (SLF288Q) /CSM/SL/SLF2-D/SLF288Q.Seq.d/ 46 8e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 492 0.0 10
U07817|U07817.1 Dictyostelium discoideum AX3 glutamine-asparagine rich protein gene, partial cds. 36 0.022 4
AC118216|AC118216.4 Mus musculus clone RP23-209N14, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 46 0.68 1
BW029366|BW029366.1 Ciona intestinalis cDNA, clone:cibd012e01, 5' end, single read. 38 0.70 2
AC129853|AC129853.3 Rattus norvegicus clone CH230-229L15, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces. 40 1.7 6
AX089750|AX089750.1 Sequence 1 from Patent WO0116326. 38 2.5 2
AJ133811|AJ133811.1 Plasmodium falciparum var gene, partial. 38 2.5 2
AC103227|AC103227.5 Rattus norvegicus clone CH230-177H5, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 2.7 1
U05166|U05166.1 Simian immunodeficiency virus SIVRhE543 clone 6-5 envelope glycoprotein (env) gene, V1 region, partial cds. 44 2.7 1
U05159|U05159.1 Simian immunodeficiency virus SIVRhE543 clone 6-17 envelope glycoprotein (env) gene, V1 region, partial cds. 44 2.7 1
dna update 2003. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116957_80(AC116957|pid:none) Dictyostelium discoideum chromoso... 176 1e-42
AY007594_1(AY007594|pid:none) Mus musculus stromelysin-1 PDGF-re... 35 2.2
(Q9EPQ8) RecName: Full=Transcription factor 20; AltName: Full=St... 35 2.2
BC138038_1(BC138038|pid:none) Mus musculus transcription factor ... 35 2.2

protein update 2009. 6. 8
PSORT

psg: 0.27 gvh: 0.22 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for SSA652 is nuc

5' end seq. ID SSA652F
5' end seq.
>SSA652F.Seq
AATTTATTGAAAATGATAAAAAAAGAATTTTAGAAGATAATCAAAGACAACAACAACAGC
ATCATCACCAACATCAAAGACAACAACAAGAACAACAACAAAATAATGAAGAATTTGTAA
CACAAACACCAGAACAAACATCAAGACAACATCCAACATTACAGCAATTACAAGAAGAAC
AAGCAAGATTACAAGAATTACAAGAACAACAACAACAACAACAACAACAACAACAAAATC
CAAAAGAAACTCGTCAACAAGAGGAATTACAAATTCAACAAAACCAACAATGGTTACAAG
AACAATTAACTCGTCAACAAGAAGAATTGAAACTTCAACAAGAGGAATTAAAACGTCAAC
AAGAGATTGATCATCAACGTCGTTTAGAATTTGAACAAGAATTGGAGAAATTTAAAAAAG
ATCAAGCTGAAAGAGATGCAAGAGATCAAAAAGAGAAACAAGAAAGAGAAGCAAGAGAAC
AAAAAGAGAAACAAGAGAGAGAAGAAAAAGAGAAACAAGAAAAGGAGGAGAAGGAAAGA-
---------
Length of 5' end seq. 539
3' end seq. ID SSA652Z
3' end seq.
>SSA652Z.Seq
----------AAAGATAAACAAAGACAAAATTCTTCACCTGCATTNTCCTCAAATGATGT
TACTACTGGTGGCGCTTCTGATGGTGGTATAGTTATTCATGTACGTGAACCATCATCAGA
AGGTATCTCTGATTCTTTGGCCGATGAAATATTGGGTTTTCTCAATCATTTAATTCATGA
TCGTATACCTTCTCGTAATCAACCAAAAGAAGACTCATTTGATAATATCCCAAACACTGA
AGATACTTCAAATCCTGAATTATCACCAATTTTAAAT
Length of 3' end seq. 267
Connected seq. ID SSA652P
Connected seq.
>SSA652P.Seq
AATTTATTGAAAATGATAAAAAAAGAATTTTAGAAGATAATCAAAGACAACAACAACAGC
ATCATCACCAACATCAAAGACAACAACAAGAACAACAACAAAATAATGAAGAATTTGTAA
CACAAACACCAGAACAAACATCAAGACAACATCCAACATTACAGCAATTACAAGAAGAAC
AAGCAAGATTACAAGAATTACAAGAACAACAACAACAACAACAACAACAACAACAAAATC
CAAAAGAAACTCGTCAACAAGAGGAATTACAAATTCAACAAAACCAACAATGGTTACAAG
AACAATTAACTCGTCAACAAGAAGAATTGAAACTTCAACAAGAGGAATTAAAACGTCAAC
AAGAGATTGATCATCAACGTCGTTTAGAATTTGAACAAGAATTGGAGAAATTTAAAAAAG
ATCAAGCTGAAAGAGATGCAAGAGATCAAAAAGAGAAACAAGAAAGAGAAGCAAGAGAAC
AAAAAGAGAAACAAGAGAGAGAAGAAAAAGAGAAACAAGAAAAGGAGGAGAAGGAAAGA-
---------AAAGATAAACAAAGACAAAATTCTTCACCTGCATTNTCCTCAAATGATGTT
ACTACTGGTGGCGCTTCTGATGGTGGTATAGTTATTCATGTACGTGAACCATCATCAGAA
GGTATCTCTGATTCTTTGGCCGATGAAATATTGGGTTTTCTCAATCATTTAATTCATGAT
CGTATACCTTCTCGTAATCAACCAAAAGAAGACTCATTTGATAATATCCCAAACACTGAA
GATACTTCAAATCCTGAATTATCACCAATTTTAAAT
Length of connected seq. 806
Full length Seq ID -
Full length Seq. -
Length of full length seq. -