>SSA649 (SSA649Q) /CSM/SS/SSA6-C/SSA649Q.Seq.d/
XXXXXXXXXXGAATGACATTTATGTGATGGATTTGAACAACAAATTCAACCATTNTCAAT
TGAAAATGGTGGGAAATTAGAGNAATTGGTATTATGTGATATTAAGGGAAAACTATGGGG
AAATTCAATACCAAATTCTGTNGGAAAATTAATTGTCTTAGGTTATAATCATCAATTAGA
AAATGGTATTTTAAATGATTCTTTAGAATTAATTTATTTTAGTAAAAGTTTTACTCATCC
AATTGATAATAATTTAATTCCAAATAATATTGAAATTATAAAAAAATAAAAAAATTTAAA
TAAAACAAAAAATAAATAAATAAATAAATAAACTTTTGACCTATTTAAAAAAAAAAAAAA
AAAAA

---*HLCDGFEQQIQPXSIENGGKLEXLVLCDIKGKLWGNSIPNSVGKLIVLGYNHQLEN
GILNDSLELIYFSKSFTHPIDNNLIPNNIEIIKK*knlnktknk*ink*tfdlfkkkkkk

Frame A:
---ndiyvmdlnnkfnhxqlkmvgn*xnwyyvilrenygeiqyqilxen*ls*viiin*k
mvf*mil*n*filvkvlliqliii*fqiilkl*knkki*ikqkink*inklltylkkkkk
k


Frame B:
---mtfm*wi*ttnstixn*kwweirxigim*y*gktmgkfntkfcxkinclrl*ssirk
wyfk*ffrinlf**kfyssn***fnsk*y*nykkikkfk*nkk*ink*inf*pi*kkkkk


Frame C:
---*HLCDGFEQQIQPXSIENGGKLEXLVLCDIKGKLWGNSIPNSVGKLIVLGYNHQLEN
GILNDSLELIYFSKSFTHPIDNNLIPNNIEIIKK*knlnktknk*ink*tfdlfkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA649 (SSA649Q) /CSM/SS/SSA6-C/SSA649Q.Seq.d/                        502   e-141
SSL543 (SSL543Q) /CSM/SS/SSL5-B/SSL543Q.Seq.d/                        414   e-115
SSF164 (SSF164Q) /CSM/SS/SSF1-C/SSF164Q.Seq.d/                        414   e-115
SSC691 (SSC691Q) /CSM/SS/SSC6-D/SSC691Q.Seq.d/                        414   e-115
SSA728 (SSA728Q) /CSM/SS/SSA7-B/SSA728Q.Seq.d/                        414   e-115
CHG341 (CHG341Q) /CSM/CH/CHG3-B/CHG341Q.Seq.d/                        117   1e-25
VFH809 (VFH809Q) /CSM/VF/VFH8-A/VFH809Q.Seq.d/                         40   0.023
VSJ187 (VSJ187Q) /CSM/VS/VSJ1-D/VSJ187Q.Seq.d/                         36   0.35
VSH270 (VSH270Q) /CSM/VS/VSH2-C/VSH270Q.Seq.d/                         36   0.35
VFM289 (VFM289Q) /CSM/VF/VFM2-D/VFM289Q.Seq.d/                         36   0.35

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   272  e-109  3
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    40  0.006  5
AE013144|AE013144.1 Thermoanaerobacter tengcongensis strain MB4T, section 171 of 244 of the complete genome.    46  0.29  1
AC138718|AC138718.1 Mus musculus chromosome UNK clone RP23-221F8, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.29  1
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    30  0.45  9
AC144453|AC144453.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0050A24, *** SEQUENCING IN PROGRESS ***, 11 ordered pieces.    44  1.2  1
AF079445|AF079445.1 Dictyostelium discoideum TipC (tipC) gene, complete cds.    44  1.2  3
AL034428|AL034428.4 Human DNA sequence from clone RP4-705D16 on chromosome 20p11.22-12.2 Contains the SNRPB2 gene for U2 small nuclear RNA-associated B''  antigen and the OTOR gene encoding otoraplin. Contains ESTs, STSs,  GSSs and a putative CpG island.    36  1.3  3
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    30  1.4  11
AC020782|AC020782.12 Homo sapiens chromosome 8, clone RP11-562L3, complete sequence.    36  1.6  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...   142   4e-33
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    45   0.001
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    44   0.001
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            44   0.002
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    44   0.002
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    39   0.043
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    39   0.073
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    38   0.12
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    35   0.80
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    35   0.80

 psg: 0.75  gvh: 0.46  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA649 is nuc

>SSA649Z.Seq
----------GAATGACATTTATGTGATGGATTTGAACAACAAATTCAACCATTNTCAAT
TGAAAATGGTGGGAAATTAGAGNAATTGGTATTATGTGATATTAAGGGAAAACTATGGGG
AAATTCAATACCAAATTCTGTNGGAAAATTAATTGTCTTAGGTTATAATCATCAATTAGA
AAATGGTATTTTAAATGATTCTTTAGAATTAATTTATTTTAGTAAAAGTTTTACTCATCC
AATTGATAATAATTTAATTCCAAATAATATTGAAATTATAAAAAAATAAAAAAATTTAAA
TAAAACAAAAAATAAATAAATAAATAAATAAACTTTTGACCTATTTAAAAAAAAAAAAAA
AAAAA