>SSA643 (SSA643Q) /CSM/SS/SSA6-B/SSA643Q.Seq.d/
GAAGCTCTTGGTTTATATGGTTTAATTATTGGTATTTTATTATCATCTGTCTCAGATACC
TATTGCCCAGGTCAAGCTTTAGTTCCATTAAACAGTGGTAACGTTATTGGTAAAAACTAA
ATAGCTTTATAAAAAAACAATAAATAATATTAAAATAAATAAATAAAAATAAACAAAAAA
AAAATTTCTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXX
XXXXXXX

EALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGKN*ial*knnk*y*nk*ikinkk
kisk*kkkkkkkkkkkkk---

Frame A:
EALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGKN*ial*knnk*y*nk*ikinkk
kisk*kkkkkkkkkkkkk---


Frame B:
kllvymv*llvfyyhlsqipiaqvkl*fh*tvvtllvktk*lykktinnikink*k*tkk
kflnkkkkkkkkkkkkkk---


Frame C:
sswfiwfnywyfiiiclryllprssfssikqw*ryw*klnsfikkq*iilk*inknkqkk
nf*ikkkkkkkkkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF709 (VSF709Q) /CSM/VS/VSF7-A/VSF709Q.Seq.d/                        218   3e-56
VSB705 (VSB705Q) /CSM/VS/VSB7-A/VSB705Q.Seq.d/                        218   3e-56
VHC659 (VHC659Q) /CSM/VH/VHC6-C/VHC659Q.Seq.d/                        218   3e-56
SSM619 (SSM619Q) /CSM/SS/SSM6-A/SSM619Q.Seq.d/                        218   3e-56
SSL478 (SSL478Q) /CSM/SS/SSL4-D/SSL478Q.Seq.d/                        218   3e-56
SSL447 (SSL447Q) /CSM/SS/SSL4-B/SSL447Q.Seq.d/                        218   3e-56
SSL123 (SSL123Q) /CSM/SS/SSL1-A/SSL123Q.Seq.d/                        218   3e-56
SSL119 (SSL119Q) /CSM/SS/SSL1-A/SSL119Q.Seq.d/                        218   3e-56
SSK860 (SSK860Q) /CSM/SS/SSK8-C/SSK860Q.Seq.d/                        218   3e-56
SSK830 (SSK830Q) /CSM/SS/SSK8-B/SSK830Q.Seq.d/                        218   3e-56

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X90516|X90516.1 D.discoideum mRNA for vacuolar proton ATPase subunit.   218  2e-53  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   218  2e-53  1
BI814603|BI814603.1 PfESToaa40a02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:VATL_AVESA P23957 VACUOLAR ATP SYNTHASE 16 KD PROTEOLIPID SUBUNIT ;, mRNA sequence.    46  0.19  1
BU498482|BU498482.1 PfESToab97g07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:VATL_AVESA P23957 VACUOLAR ATP SYNTHASE 16 KD PROTEOLIPID SUBUNIT ;, mRNA sequence.    46  0.19  1
BU498405|BU498405.1 PfESToab96g09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9VKQ8 Q9VKQ8 CG6737 PROTEIN. ;, mRNA sequence.    46  0.19  1
AL935303|AL935303.7 Zebrafish DNA sequence from clone CH211-197A2.    44  0.76  1
D31785|D31785.1 Hansenula wingei mitochondrial DNA, complete sequence.    44  0.76  1
AP001777|AP001777.2 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-716B20, WORKING DRAFT SEQUENCE, 22 unordered pieces.    42  2.7  2
AC011564|AC011564.4 Homo sapiens clone RP11-4L20, LOW-PASS SEQUENCE SAMPLING.    42  3.0  1
BM165817|BM165817.1 EST568340 PyBS Plasmodium yoelii yoelii cDNA clone PYCMT56 5' end, mRNA sequence.    42  3.0  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54642) RecName: Full=V-type proton ATPase proteolipid subunit;...    55   8e-07

 psg: 0.75  gvh: 0.59  alm: 0.29  top: 0.47  tms: 0.07  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSA643 is end

>SSA643F.Seq
GAAGCTCTTGGTTTATATGGTTTAATTATTGGTATTTTATTATCATCTGTCTCAGATACC
TATTGCCCAGGTCAAGCTTTAGTTCCATTAAACAGTGGTAACGTTATTGGTAAAAACTAA
ATAGCTTTATAAAAAAACAATAAATAATATTAAAATAAATAAATAAAAATAAACAAAAAA
AAAATTTCTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA