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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA638
Library SS
(Link to library)
Clone ID SSA638
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16203-1
Original site URL
Representative seq. ID SSA638E
(Link to Original site)
Representative DNA sequence 
>SSA638 (SSA638Q) /CSM/SS/SSA6-B/SSA638Q.Seq.d/
GTTTTTCATCACATTCACACACATAATATATATTAAAATGTCTTACACTCCAAACTCATT
CGTCGGTGTTTTATATGGTCTTAGCGTTTTATNTTGGCATTTCACATGGTGTCGGTAAAT
TAAATACCTTCAAATCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTA
CTGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAAC
CAAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTG
GTACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAAT
ACAAATTCCACATATTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAACATGTAT
AAAACTCAATTTTACGTGTAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTA
AAAC
sequence update 1999. 2.23
Translated Amino Acid sequence 
fsshsht*YILKCLTLQTHSSVFYMVLAFYXGISHGVGKLNTFKSIAKEDLSKEIKTTAT
AEKSKAYQEGFEAGVKSTQPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**yky
kfhifkkinlqkkkkkkhv*nsilrvill*kkiknl*nfk
Translated Amino Acid sequence (All Frames) 
Frame A:
vfhhihthniy*nvlhsklirrcfiws*rfxlafhmvsvn*ipsnqlpkkiyqkklklll
llknqkhtkkvsklvlnqlnqkqevslmvvksknsllkpvvptfynktkinqqq*ynnin
tnstylkk*iykkkkkknmyktqfyv*fyykkk*ktykilk


Frame B:
ffitfthiiyikmsytpnsfvgvlyglsvlxwhftwcr*ikylqincqrrfikrn*nycy
c*kiksiprrfrswc*instksrrchlw**nrkthc*nlwyqpfttklk*tnnsniii*i
qiphi*knkstkkkkkktciklnftcnfiikknkkpikf*n


Frame C:
fsshsht*YILKCLTLQTHSSVFYMVLAFYXGISHGVGKLNTFKSIAKEDLSKEIKTTAT
AEKSKAYQEGFEAGVKSTQPKAGGVTYGSEIEKLIAETCGTNLLQQN*nkpttvi**yky
kfhifkkinlqkkkkkkhv*nsilrvill*kkiknl*nfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA638 (SSA638Q) /CSM/SS/SSA6-B/SSA638Q.Seq.d/                        741   0.0
VHO746 (VHO746Q) /CSM/VH/VHO7-B/VHO746Q.Seq.d/                        731   0.0
VHG162 (VHG162Q) /CSM/VH/VHG1-C/VHG162Q.Seq.d/                        731   0.0
VSK142 (VSK142Q) /CSM/VS/VSK1-B/VSK142Q.Seq.d/                        729   0.0
VSC320 (VSC320Q) /CSM/VS/VSC3-A/VSC320Q.Seq.d/                        716   0.0
VSG577 (VSG577Q) /CSM/VS/VSG5-D/VSG577Q.Seq.d/                        702   0.0
VSH163 (VSH163Q) /CSM/VS/VSH1-C/VSH163Q.Seq.d/                        700   0.0
VFA207 (VFA207Q) /CSM/VF/VFA2-A/VFA207Q.Seq.d/                        698   0.0
VHF683 (VHF683Q) /CSM/VH/VHF6-D/VHF683Q.Seq.d/                        674   0.0
VSH281 (VSH281Q) /CSM/VS/VSH2-D/VSH281Q.Seq.d/                        648   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY254473|AY254473.1 Dictyostelium discoideum nucleotide exchange factor RasGEF Q (gefQ) gene, complete cds.   563  0.0  5
L04534|L04534.1 Rotavirus non-structural protein (NS35) gene, complete cds.    52  0.006  1
AB022770|AB022770.1 Human rotavirus mRNA for NSP2, complete cds.    52  0.006  1
X57944|X57944.1 Human rotavirus segment 7 gp33 gene.    52  0.006  1
AC092543|AC092543.3 Homo sapiens BAC clone RP11-291E21 from 4, complete sequence.    42  0.027  5
AX323698|AX323698.1 Sequence 186 from Patent WO0192565.           32  0.041  4
AX278001|AX278001.1 Sequence 164 from Patent WO0177375.           32  0.041  4
AX252049|AX252049.1 Sequence 310 from Patent WO0168911.           32  0.041  4
AF378133|AF378133.1 Plasmodium falciparum clone c-18-4-23 MB2 mRNA, partial cds.    48  0.099  1
AC124140|AC124140.4 Mus musculus clone RP23-257F18, WORKING DRAFT SEQUENCE, 6 ordered pieces.    48  0.099  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000478_3069(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    33   4.4
CP000141_1819(CP000141|pid:none) Carboxydothermus hydrogenoforma...    32   7.5
AM494968_122(AM494968|pid:none) Leishmania braziliensis chromoso...    32   9.8
(Q4A5G1) RecName: Full=Trigger factor;          Short=TF;  &AE01...    32   9.8
protein update 2009. 3. 5
PSORT 

 psg: 0.96  gvh: 0.48  alm: 0.40  top: 0.43  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA638 is cyt
5' end seq. ID SSA638F
5' end seq. 
>SSA638F.Seq
GTTTTTCATCACATTCACACACATAATATATATTAAAATGTCTTACACTCCAAACTCATT
CGTCGGTGTTTTATATGGTCTTAGCGTTTTATNNNNNCATTTCACATGGTGTCGGTAAAT
TAAATACCTTCAAATCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTA
CTGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAAC
CAAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTG
GTACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAAT
ACAAATTCCACATATTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAACATGTAT
AAAACTCAATTTTACGTGTAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTA
AAAC
Length of 5' end seq. 484
3' end seq. ID SSA638Z
3' end seq. 
>SSA638Z.Seq
----------ATATATTAAAATGTCTTACACTCCAAACTCATTCGTCGGTGTTTTATATG
GTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGGTAAATTAAATACCTTCAAATCAA
TTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTACTGCTGAAAAATCAAAAG
CATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAACCAAAAGCAGGAGGTGTCA
CTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGGTACCAACCTTTTACAAC
AAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATACAAATTCCACATATTTA
AAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAACATGTATAAAACTCAATTTTACGTG
TAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTAAAAC
Length of 3' end seq. 456
Connected seq. ID SSA638P
Connected seq. 
>SSA638P.Seq
GTTTTTCATCACATTCACACACATAATATATATTAAAATGTCTTACACTCCAAACTCATT
CGTCGGTGTTTTATATGGTCTTAGCGTTTTATNNNNNCATTTCACATGGTGTCGGTAAAT
TAAATACCTTCAAATCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTA
CTGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAAC
CAAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTG
GTACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAAT
ACAAATTCCACATATTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAACATGTAT
AAAACTCAATTTTACGTGTAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTA
AAAC----------ATATATTAAAATGTCTTACACTCCAAACTCATTCGTCGGTGTTTTA
TATGGTCTTAGCGTTTTATTTGGCATTTCACATGGTGTCGGTAAATTAAATACCTTCAAA
TCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTACTGCTGAAAAATCA
AAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAACCAAAAGCAGGAGGT
GTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTGGTACCAACCTTTTA
CAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAATACAAATTCCACATA
TTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAACATGTATAAAACTCAATTTTA
CGTGTAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTAAAAC
Length of connected seq. 940
Full length Seq ID SSA638E
Full length Seq. 
>SSA638E.Seq
GTTTTTCATCACATTCACACACATAATATATATTAAAATGTCTTACACTCCAAACTCATT
CGTCGGTGTTTTATATGGTCTTAGCGTTTTATNTTGGCATTTCACATGGTGTCGGTAAAT
TAAATACCTTCAAATCAATTGCCAAAGAAGATTTATCAAAAGAAATTAAAACTACTGCTA
CTGCTGAAAAATCAAAAGCATACCAAGAAGGTTTCGAAGCTGGTGTTAAATCAACTCAAC
CAAAAGCAGGAGGTGTCACTTATGGTAGTGAAATCGAAAAACTCATTGCTGAAACCTGTG
GTACCAACCTTTTACAACAAAACTAAAATAAACCAACAACAGTAATATAATAATATAAAT
ACAAATTCCACATATTTAAAAAAATAAATCTACAAAAAAAAAAAAAAAAAAAACATGTAT
AAAACTCAATTTTACGTGTAATTTTATTATAAAAAAAAATAAAAAACCTATAAAATTTTA
AAAC
Length of full length seq. 484