>SSA623 (SSA623Q) /CSM/SS/SSA6-A/SSA623Q.Seq.d/
TTCAAAACCAGGTGATTTTGACTTTTATTTATTTGTTCAACAATGGATTTATTCATACTG
CGATTCACAAACTTGTATTCAAAATAAAGAAAGAGAAGCATTCACTATCCATGGTTTATG
GACAGAGAATAGTGATGGCAGTTATCCATCATTCTGTTCAGGTCCATCATTCAATGTTAA
TGCTATCCAAGATTTAGAAGATCAATTAAACTTTGATTGGCCATCACTCACTGGTCCAAA
CACTGATTTCTGGACTCACGAATTCAGCAAACATGGTACTTGTTCAATCACAGGTCCAAT
CACAGATATTCACGATTATTTCGCTACTGGTATCAAACTTTACACCGAATTCAATATCAC
TGCTGCCCTCGAATCTGAAAATATTTATCCATCAGATAGCAACACTTACAAACCAGTCGA
TATCACTAATGCTATCACCACTCATTTTGGTGGTAAACCAGGTATTCAATGTTCATCTGG
TCAATTATCAACTGTTGCTGTTTGTATCGATAAAAATAGTTTATCAATCATGGATTGTCC
AGATCTCCAAGGTTGGAGTTGTTCTGGTAGTGTTAAATTCCCAAGCACTGCTTAAAAATA
TTTAACAAAAACTATCATATAXXXXXXXXXX

SKPGDFDFYLFVQQWIYSYCDSQTCIQNKEREAFTIHGLWTENSDGSYPSFCSGPSFNVN
AIQDLEDQLNFDWPSLTGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNIT
AALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCSSGQLSTVAVCIDKNSLSIMDCP
DLQGWSCSGSVKFPSTA*kyltktii---

Frame A:
fktr*f*llficstmdlfilrftnlysk*rkrsihypwfmdre**wqlsiilfrsiiqc*
cyprfrrsikl*laithwskh*fldsriqqtwylfnhrsnhrysrlfrywyqtlhriqyh
ccpri*kylsir*qhlqtsryh*cyhhsfww*trysmfiwsiinccclyr*k*finhgls
rsprlelfw*c*ipkhclkifnknyh---


Frame B:
SKPGDFDFYLFVQQWIYSYCDSQTCIQNKEREAFTIHGLWTENSDGSYPSFCSGPSFNVN
AIQDLEDQLNFDWPSLTGPNTDFWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNIT
AALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCSSGQLSTVAVCIDKNSLSIMDCP
DLQGWSCSGSVKFPSTA*kyltktii---


Frame C:
qnqviltfiylfnngfihtaihklvfkikkekhslsmvygqrivmavihhsvqvhhsmlm
lski*kin*tlighhslvqtlisgltnsanmvlvqsqvqsqiftiisllvsnftpnsisl
lpsnlkifihqiatltnqsislmlsplilvvnqvfnvhlvnyqlllfvsikivyqswivq
iskvgvvlvvlnsqallkni*qklsy---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA623 (SSA623Q) /CSM/SS/SSA6-A/SSA623Q.Seq.d/                       1231   0.0
SSI141 (SSI141Q) /CSM/SS/SSI1-B/SSI141Q.Seq.d/                       1223   0.0
VHB567 (VHB567Q) /CSM/VH/VHB5-C/VHB567Q.Seq.d/                       1130   0.0
VSA582 (VSA582Q) /CSM/VS/VSA5-D/VSA582Q.Seq.d/                       1114   0.0
VFH722 (VFH722Q) /CSM/VF/VFH7-A/VFH722Q.Seq.d/                       1051   0.0
VSC227 (VSC227Q) /CSM/VS/VSC2-B/VSC227Q.Seq.d/                       1041   0.0
VFI169 (VFI169Q) /CSM/VF/VFI1-C/VFI169Q.Seq.d/                       1035   0.0
VFL529 (VFL529Q) /CSM/VF/VFL5-B/VFL529Q.Seq.d/                       1023   0.0
SSK670 (SSK670Q) /CSM/SS/SSK6-C/SSK670Q.Seq.d/                       1019   0.0
SSF854 (SSF854Q) /CSM/SS/SSF8-C/SSF854Q.Seq.d/                       1009   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    62  4e-21  6
AL024509|AL024509.1 Human DNA sequence from clone 522P13 on chromosome 6p21.31-22.3.  Contains a 60S Ribosomal Protein L21 pseudogene and an HNRNP A3  (Heterogenous Nuclear Riboprotein A3, FBRNP) pseudogene. Contains  ESTs, STSs and GSSs.    48  0.13  1
AC011869|AC011869.3 Homo sapiens clone RP11-16I5, LOW-PASS SEQUENCE SAMPLING.    36  0.27  3
AQ058299|AQ058299.1 CIT-HSP-2345H13.TR CIT-HSP Homo sapiens genomic clone 2345H13, genomic survey sequence.    36  0.34  2
AC087469|AC087469.1 Homo sapiens chromosome 15 clone RP11-265G2 map 15, LOW-PASS SEQUENCE SAMPLING.    46  0.51  1
AC079806|AC079806.3 Homo sapiens chromosome 7 clone RP11-760E16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46  0.51  1
AC094488|AC094488.6 Rattus norvegicus clone CH230-4G21, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.62  3
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                 40  1.0  4
AC114549|AC114549.8 Mus musculus clone RP24-216P17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    40  1.2  3
AC021377|AC021377.4 Homo sapiens clone RP11-26F24, WORKING DRAFT SEQUENCE, 21 unordered pieces.    44  1.2  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JE0316(JE0316;JE0407)protozoan RNase,DdI - slime mold (Dictyoste...   422   e-117
(Q7M438) RecName: Full=Ribonuclease DdI;          Short=RNase Dd...   422   e-117
(P80022) RecName: Full=Extracellular ribonuclease LE;          S...   146   4e-34
U13256_1(U13256|pid:none) Nicotiana alata RNase NE mRNA, complet...   144   3e-33
S66342(S66342) ribonuclease II (EC 3.1.-.-) precursor, wound-ind...   142   8e-33
JC5518(JC5518)ribonuclease M5 (EC 3.1.-.-) precursor, wound-indu...   141   1e-32
AB112028_1(AB112028|pid:none) Nicotiana glutinosa ngr1 gene for ...   141   1e-32
AB034638_1(AB034638|pid:none) Nicotiana tabacum mRNA for RNase, ...   141   2e-32
AC146971_5(AC146971|pid:none) Medicago truncatula clone mth2-128...   140   4e-32
AB034248_1(AB034248|pid:none) Volvox carteri vrn1 mRNA for S-lik...   138   1e-31

 psg: 0.75  gvh: 0.46  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA623 is cyt

>SSA623F.Seq
TTCAAAACCAGGTGATTTTGACTTTTATTTATTTGTTCAACAATGGATTTATTCATACTG
CGATTCACAAACTTGTATTCAAAATAAAGAAAGAGAAGCATTCACTATCCATGGTTTATG
GACAGAGAATAGTGATGGCAGTTATCCATCATTCTGTTCAGGTCCATCATTCAATGTTAA
TGCTATCCAAGATTTAGAAGATCAATTAAACTTTGATTGGCCATCACTCACTGGTCCAAA
CACTGATTTCTGGACTCACGAATTCAGCAAACATGGTACTTGTTCAATCACAGGTCCAAT
CACAGATATTCACGATTATTTCGCTACTGGTATCAAACTTTACACCGAATTCAATATCAC
TGCTGCCCTCGAATCTGAAAATATTTATCCATCAGATAGCAACACTTACAAACCAGTCGA
TATCACTAATGCTATCACCACTCATTTTGGTGGTAAACCAGGTATTCAATGTTCATCTGG
TCAATTATCAACTGTTGCTGTTTGTATCGATAAAAATAGTTTATCAATCATGGATTGTCC
AGATCTCCAAGGTTGGAGTTGTTCTGGTAGTGTTAAATTCCCAAGCACTGCTTAAAAATA
TTTAACAAAAACTATCATATA----------