SSA615
Library SS
(Link to library)
Clone ID SSA615
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16352-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SSA615 (SSA615Q) /CSM/SS/SSA6-A/SSA615Q.Seq.d/
ATTTTGTACTATTAAACTAAATTCTAAAATGTTATTCAAATCATTACAATCAATCTCAAG
TGTTAGCTCAGTCCAAAAGAATCAAATTTCTTCAATTTCAGTAGGAAGCACTCAATCTAA
CAATAATGCTGCTCTCTTAGATGCTGCTGCACTCGTTGTAATTCCAGGTTTATTAACTGC
TGCTGCTGTTGCCCATATTTAAATCTTTAAGGATTAATTAAACCAATTACCAATATTTCA
TTCATTTTTAATTTATATTATATATCATTGTGTGTGTATTTTTTGAAAGCTCTATTTTTA
TATAGTAAATCCATATTAAAAATAAATAAAATTAAATAATTGTTAACAAAAAAAAAAAAA
AXXXXXXXXXX
sequence update 1998. 7.24
Translated Amino Acid sequence
FCTIKLNSKMLFKSLQSISSVSSVQKNQISSISVGSTQSNNNAALLDAAALVVIPGLLTA
AAVAHI*ifkd*lnqlpifhsfliyiiyhcvcif*klyfyivnpy*k*iklnnc*qkkk-
--


Translated Amino Acid sequence (All Frames)
Frame A:
ilyy*tkf*nviqiitinlkc*lspkesnffnfsrkhsi*q*ccslrccctrcnsrfinc
ccccpylnl*glikpitnisfifnlyyislcvyflkalflysksilkinkik*lltkkkk
---


Frame B:
FCTIKLNSKMLFKSLQSISSVSSVQKNQISSISVGSTQSNNNAALLDAAALVVIPGLLTA
AAVAHI*ifkd*lnqlpifhsfliyiiyhcvcif*klyfyivnpy*k*iklnnc*qkkk-
--


Frame C:
fvlln*ilkcysnhynqsqvlaqskrikflqfq*ealnltimlls*mllhsl*fqvy*ll
lllpifkslrin*tnyqyfihf*filyiivcvffessifi**ihiknk*n*iivnkkkk-
--


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA615 (SSA615Q) /CSM/SS/SSA6-A/SSA615Q.Seq.d/ 460 e-129
SHG868 (SHG868Q) /CSM/SH/SHG8-C/SHG868Q.Seq.d/ 460 e-129
SSF509 (SSF509Q) /CSM/SS/SSF5-A/SSF509Q.Seq.d/ 450 e-126
SSE588 (SSE588Q) /CSM/SS/SSE5-D/SSE588Q.Seq.d/ 450 e-126
SSE247 (SSE247Q) /CSM/SS/SSE2-B/SSE247Q.Seq.d/ 440 e-123
SHH448 (SHH448Q) /CSM/SH/SHH4-B/SHH448Q.Seq.d/ 398 e-110
CHN336 (CHN336Q) /CSM/CH/CHN3-B/CHN336Q.Seq.d/ 398 e-110
SSH384 (SSH384Q) /CSM/SS/SSH3-D/SSH384Q.Seq.d/ 379 e-104
SSL794 (SSL794Q) /CSM/SS/SSL7-D/SSL794Q.Seq.d/ 373 e-102
SSL434 (SSL434Q) /CSM/SS/SSL4-B/SSL434Q.Seq.d/ 359 2e-98

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC080109|AC080109.1 Homo sapiens chromosome 4 clone RP11-322B12 map 4, LOW-PASS SEQUENCE SAMPLING. 46 0.15 3
AC105284|AC105284.1 Homo sapiens chromosome 4 clone RP11-1G8, WORKING DRAFT SEQUENCE, 4 unordered pieces. 46 0.29 1
AC079960|AC079960.2 Homo sapiens chromosome 4 clone RP11-422D16 map 4, WORKING DRAFT SEQUENCE, 37 unordered pieces. 46 0.29 1
AC114770|AC114770.4 Homo sapiens BAC clone RP11-422D16 from 4, complete sequence. 46 0.29 1
AI757180|AI757180.1 EtESTea31c07.y1 Eimeria S5-2 Sporozoite stage Eimeria tenella cDNA 5', mRNA sequence. 32 3.2 2
AI759340|AI759340.1 EtESTea27d05.y1 Eimeria S5-2 Sporozoite stage Eimeria tenella cDNA 5', mRNA sequence. 32 3.3 2
BG516652|BG516652.1 EtESTed59d07.y1 Eimeria tenella S5-2 cDNA Neg Selected Eimeria tenella cDNA 5', mRNA sequence. 32 3.5 2
BG516015|BG516015.1 EtESTed47h06.y1 Eimeria tenella S5-2 cDNA Neg Selected Eimeria tenella cDNA 5', mRNA sequence. 32 3.5 2
CD345324|CD345324.1 EtESTef88b05.y1 Eimeria tenella S5-2 Excised cDNA Eimeria tenella cDNA 5', mRNA sequence. 32 3.8 2
AC121848|AC121848.3 Mus musculus chromosome 15 clone RP24-87G10, complete sequence. 42 4.0 3
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54M59) RecName: Full=Uncharacterized transmembrane protein DDB... 36 0.36
FB789355_1(FB789355|pid:none) Sequence 8628 from Patent WO200803... 32 5.2
AY380581_1(AY380581|pid:none) Guaroa virus strain BeH22063 polyp... 32 6.7

protein update 2009. 1.26
PSORT

psg: 0.76 gvh: 0.60 alm: 0.25 top: 0.63 tms: 0.07 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.26 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSA615 is nuc

5' end seq. ID SSA615F
5' end seq.
>SSA615F.Seq
ATTTTGTACTATTAAACTAAATTCTAAAATGTTATTCAAATCATTACAATCAATCTCAAG
TGTTAGCTCAGTCCAAAAGAATCAAATTTCTTCAATTTCAGTAGGAAGCACTCAATCTAA
CAATAATGCTGCTCTCTTAGATGCTGCTGCACTCGTTGTAATTCCAGGTTTATTAACTGC
TGCTGCTGTTGCCCATATTTAAATCTTTAAGGATTAATTAAACCAATTACCAATATTTCA
TTCATTTTTAATTTATATTATATATCATTGTGTGTGTATTTTTTGAAAGCTCTATTTTTA
TATAGTAAATCCATATTAAAAATAAATAAAATTAAATAATTGTTAACAAAAAAAAAAAAA
A
Length of 5' end seq. 361
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -