SSA612
Library SS
(Link to library)
Clone ID SSA612
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15745-1
Original site URL
Representative seq. ID SSA612F
(Link to Original site)
Representative DNA sequence
>SSA612 (SSA612Q) /CSM/SS/SSA6-A/SSA612Q.Seq.d/
CTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCTTACGACGAAGCTT
AGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGTAAAAACAAAATCGT
CTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAAATCAACCAACCATC
TGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAATCAAAACGTTCAAA
ATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCCAAAGCTAATGTCTC
TGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTTGAAGTCCATTACAC
CGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGC
TGATTACTCTGGTAACAAATCAACCAACTAAACGTTACACGCATCTAAAAATGTATACAT
ATTTTAAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1998. 7.24
Translated Amino Acid sequence
*FHNGRCFLHRIKSCLRRSLADSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQEINQPS
ERLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQVIKNIGVEVHYT
VADDLNEEELMTKVRKSSGADYSGNKSTN*tlhasknvyif*kkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
lisqwpmfppqn*kllttkls*fk*yqlvfiqirr*kqnrlir*r*rwfc*isprnqpti
*tficilksciw***iktfkirfhlmvw*rswspcqs*clcpqsfsqtshqkhwc*splh
rr**sq*rrindqss*ikwc*llw*qinqlnvtri*kcihilkkkk---


Frame B:
*FHNGRCFLHRIKSCLRRSLADSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQEINQPS
ERLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQVIKNIGVEVHYT
VADDLNEEELMTKVRKSSGADYSGNKSTN*tlhasknvyif*kkkk---


Frame C:
nftmadvsstelkaaydea*liqmiptgvysntkvktkssypvkvavvlln*pkkstnhl
nvymht*elylvmmnqnvqnsfsshgvvkklvplpklmslstklqsnkssktlvlksitp
slmismkkn**pkfvnqvvlitlvtnqptkrythlkmytyfkkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA612 (SSA612Q) /CSM/SS/SSA6-A/SSA612Q.Seq.d/ 961 0.0
VSK407 (VSK407Q) /CSM/VS/VSK4-A/VSK407Q.Seq.d/ 948 0.0
VSH509 (VSH509Q) /CSM/VS/VSH5-A/VSH509Q.Seq.d/ 948 0.0
VSD863 (VSD863Q) /CSM/VS/VSD8-C/VSD863Q.Seq.d/ 948 0.0
VSA452 (VSA452Q) /CSM/VS/VSA4-C/VSA452Q.Seq.d/ 948 0.0
VFE866 (VFE866Q) /CSM/VF/VFE8-C/VFE866Q.Seq.d/ 948 0.0
SSM221 (SSM221Q) /CSM/SS/SSM2-A/SSM221Q.Seq.d/ 948 0.0
SSI114 (SSI114Q) /CSM/SS/SSI1-A/SSI114Q.Seq.d/ 948 0.0
SSG248 (SSG248Q) /CSM/SS/SSG2-B/SSG248Q.Seq.d/ 948 0.0
SSF333 (SSF333Q) /CSM/SS/SSF3-B/SSF333Q.Seq.d/ 948 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M92992|M92992.1 Dictyostelium discoideum cyclic AMP-regulated protein (p16) mRNA, complete cds. 848 0.0 2
X61797|X61797.1 Dictyostelium discoideum mRNA for p17, purified from actin-myosin complex. 833 0.0 2
CC594013|CC594013.1 CH240_395P7.T7 CHORI-240 Bos taurus genomic clone CH240_395P7, genomic survey sequence. 46 0.41 1
U40160|U40160.1 Caenorhabditis elegans cosmid C56E10. 36 0.64 2
AP004491|AP004491.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023. 40 1.2 4
AC109352|AC109352.3 Homo sapiens BAC clone RP11-489P20 from 4, complete sequence. 38 1.5 3
AJ013038|AJ013038.1 Entamoeba histolytica EST EhEST330. 44 1.6 1
AC016044|AC016044.11 Homo sapiens chromosome 15 clone RP11-209K10 map 15q21.3, complete sequence. 38 5.7 3
AP006161|AP006161.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 6.4 1
CB396192|CB396192.1 OSTR168B8_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence. 42 6.4 1
dna update 2003. 7.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB080297_1(AB080297|pid:none) Marsupenaeus japonicus cArp-1 mRNA... 97 3e-19
AY122215_1(AY122215|pid:none) Drosophila melanogaster LP08941 fu... 93 3e-18
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof... 90 3e-17
AB038364_1(AB038364|pid:none) Rattus norvegicus mRNA for SH3P7r4... 84 1e-15
BC095818_1(BC095818|pid:none) Danio rerio zgc:112450, mRNA (cDNA... 84 1e-15
AB039818_1(AB039818|pid:none) Rattus norvegicus mRNA for SH3P7r2... 84 1e-15
(Q9JHL4) RecName: Full=Drebrin-like protein; AltName: Full=SH3 d... 84 1e-15
AK153389_1(AK153389|pid:none) Mus musculus bone marrow macrophag... 84 1e-15
AB039819_1(AB039819|pid:none) Rattus norvegicus mRNA for SH3P7r3... 84 1e-15
BT081567_1(BT081567|pid:none) Rana catesbeiana clone rcat-evr-52... 84 2e-15
protein update 2009. 6. 8
PSORT

psg: 0.50 gvh: 0.43 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: mitochondrial
20.0 %: nuclear

>> prediction for SSA612 is cyt

5' end seq. ID SSA612F
5' end seq.
>SSA612F.Seq
CTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCTTACGACGAAGCTT
AGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGTAAAAACAAAATCGT
CTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAAATCAACCAACCATC
TGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAATCAAAACGTTCAAA
ATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCCAAAGCTAATGTCTC
TGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTTGAAGTCCATTACAC
CGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGC
TGATTACTCTGGTAACAAATCAACCAACTAAACGTTACACGCATCTAAAAATGTATACAT
ATTTTAAAAAAAAAAAAAAA----------
Length of 5' end seq. 500
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -