>SSA604 (SSA604Q) /CSM/SS/SSA6-A/SSA604Q.Seq.d/
AGAATTGAATTCTATTCTAATAATTAATTTATAAAAAAAAAAAAAAATAAAAAAAACCAA
AAAAAAAACCCACACAAAAAAAAAAAAAAAAAAAAAAAAATGTCATTTCCATATGAATAT
ATATTTAAATACATCATTATTGGTGATATGGGTGTAGGTAAATCATGTCTCCTTCACCAA
TTCACTGAAAATAAATTCGTCCCAGATTCACCACATACAATTGGTGTAGAGTTTGGTACA
AGAATTGTAGATGTAAATAATAAAAAAATTAAATTACAAATTTGGGATACTGCAGGTCAA
GAAAGATTTAGGGCAGTTACACGTTCATATTATAGAGGTGCAGCAGGTGCATTATTAGTT
TATGATATTACAAGAAGAATTACATACAACCACTTAACCACTTGGTTAACTGATGCTAGA
AATCTTACTAATCCAAACACTGTCATCATGTTAATTGGTAACAAAAAAGATTTGGAAGGT
CAAAGAGATGTCACCTATGAAGAGGCTTCTGCTTTTGCAAAACAAAATGGTTTAATTTTT
GTGGATCTAGTGCAAAAACTGGTGAGAATGTAGAAGAAGCTTTCTXXXXXXXXXX

riefysnn*FIKKKKNKKNQKKNPHKKKKKKKKMSFPYEYIFKYIIIGDMGVGKSCLLHQ
FTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLV
YDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIF
VDLVQKLVRM*kkl---

Frame A:
riefysnn*FIKKKKNKKNQKKNPHKKKKKKKKMSFPYEYIFKYIIIGDMGVGKSCLLHQ
FTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLV
YDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIF
VDLVQKLVRM*kkl---


Frame B:
elnsiliinl*kkkkikktkkkthtkkkkkkkkchfhmniylntsllviwv*vnhvsftn
slkinssqihhiqlv*slvqel*m*iikklnykfgilqvkkdlgqlhvhiievqqvhy*f
milqeelhttt*plg*lmleilliqtlssc*lvtkkiwkvkemspmkrllllqnkmv*fl
wi*cknw*ecrrsf---


Frame C:
n*ilf**liykkkkk*kkpkkkptqkkkkkkknvisi*iyi*ihhyw*ygcr*imspspi
h*k*irprfttynwcrvwykncrck**kn*itnlgycrsrki*gsytfil*rcsrciisl
*yykknyiqplnhlvn*c*ksy*skhchhvnw*qkrfgrskrchl*rgfcfcktkwfnfc
gssaktgenveeaf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA604 (SSA604Q) /CSM/SS/SSA6-A/SSA604Q.Seq.d/                        920   0.0
SSF373 (SSF373Q) /CSM/SS/SSF3-D/SSF373Q.Seq.d/                        898   0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/                        888   0.0
SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/                        852   0.0
SSK429 (SSK429Q) /CSM/SS/SSK4-B/SSK429Q.Seq.d/                        844   0.0
VSE476 (VSE476Q) /CSM/VS/VSE4-D/VSE476Q.Seq.d/                        842   0.0
SSM345 (SSM345Q) /CSM/SS/SSM3-B/SSM345Q.Seq.d/                        805   0.0
VSA193 (VSA193Q) /CSM/VS/VSA1-D/VSA193Q.Seq.d/                        607   e-173
SSM262 (SSM262Q) /CSM/SS/SSM2-C/SSM262Q.Seq.d/                        607   e-173
SSF727 (SSF727Q) /CSM/SS/SSF7-B/SSF727Q.Seq.d/                        607   e-173

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U02927|U02927.1 Dictyostelium discoideum Ax3 Rab4 mRNA, complete cds.   541  0.0  3
AF112206| (AL162081) hypothetical protein [Ho, mRNA sequence.    62  4e-23  4
U02926|U02926.1 Dictyostelium discoideum Ax3 Rab2 mRNA, partial cds.    90  1e-19  2
BQ194903|BQ194903.1 UI-R-CN1-cmb-p-04-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone UI-R-CN1-cmb-p-04-0-UI 3', mRNA sequence.    46  1e-19  5
AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.    58  1e-19  5
W82078|W82078.1 me96g07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone IMAGE:403452 5' similar to SW:RB14_RAT P35287 RAS-RELATED PROTEIN RAB-14. [1] ;, mRNA sequence.    46  1e-18  5
BX524784|BX524784.1 RZPD Mus musculus cDNA clone IMAGp952P194 = IMAGE:348856 5' EST.    46  2e-18  5
CB272378|CB272378.1 mai57f11.y1 McCarrey Eddy spermatocytes Mus musculus cDNA clone IMAGE:6445700 5' similar to SW:RB14_RAT P35287 RAS-RELATED PROTEIN RAB-14. [1] ;, mRNA sequence.    46  2e-18  5
AA217816|AA217816.1 mu98g09.r1 Soares mouse lymph node NbMLN Mus musculus cDNA clone IMAGE:653632 5' similar to SW:RB14_RAT P35287 RAS-RELATED PROTEIN RAB-14. ;, mRNA sequence.    46  2e-18  5
BQ563748|BQ563748.1 gi06b09.y1 Mouse Organ of Corti cDNA pBluescript Mus musculus cDNA clone gi06b09 5', mRNA sequence.    46  3e-18  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02927_1(U02927|pid:none) Dictyostelium discoideum Ax3 Rab4 mRNA...   304   1e-81
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa...   260   3e-69
AL137068_10(AL137068|pid:none) Human DNA sequence from clone RP1...   258   9e-68
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei...   258   9e-68
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209...   258   9e-68
(P61107) RecName: Full=Ras-related protein Rab-14;  &(Q52NJ6) Re...   258   9e-68
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco...   258   1e-67
BC058341_1(BC058341|pid:none) Danio rerio RAB14, member RAS onco...   256   3e-67
E42148(E42148)GTP-binding protein rab14 - rat                         254   9e-67
BT076415_1(BT076415|pid:none) Caligus rogercresseyi clone crog-e...   251   8e-66

 psg: 0.31  gvh: 0.28  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.68  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for SSA604 is nuc

>SSA604F.Seq
AGAATTGAATTCTATTCTAATAATTAATTTATAAAAAAAAAAAAAAATAAAAAAAACCAA
AAAAAAAACCCACACAAAAAAAAAAAAAAAAAAAAAAAAATGTCATTTCCATATGAATAT
ATATTTAAATACATCATTATTGGTGATATGGGTGTAGGTAAATCATGTCTCCTTCACCAA
TTCACTGAAAATAAATTCGTCCCAGATTCACCACATACAATTGGTGTAGAGTTTGGTACA
AGAATTGTAGATGTAAATAATAAAAAAATTAAATTACAAATTTGGGATACTGCAGGTCAA
GAAAGATTTAGGGCAGTTACACGTTCATATTATAGAGGTGCAGCAGGTGCATTATTAGTT
TATGATATTACAAGAAGAATTACATACAACCACTTAACCACTTGGTTAACTGATGCTAGA
AATCTTACTAATCCAAACACTGTCATCATGTTAATTGGTAACAAAAAAGATTTGGAAGGT
CAAAGAGATGTCACCTATGAAGAGGCTTCTGCTTTTGCAAAACAAAATGGTTTAATTTTT
GTGGATCTAGTGCAAAAACTGGTGAGAATGTAGAAGAAGCTTTCT----------