>SSA586 (SSA586Q) /CSM/SS/SSA5-D/SSA586Q.Seq.d/
ATCAAATTAAAATTAAATTTTAAAAAATAAAATAAAATGACACTCTTTTCATCAATCTCA
TCAATGTCTTGTTCAATGACAAGTTCAAAATCTAGTTTGGCATCATTTGGTATTGGAACA
AGTATGGGTTCAAATTCAATTGCATGTAGTGTTGGTAGTGGTAGTTGTGGTAGTGGTAGT
GGTAGTGGTAGTGGTGGTTGTGGTGATTTAACCGGTGGAGCTAAATCAAGTGGTGGTAGT
TGTGGAGGAAAAGGCGGATCACATAATCATGGTCATGGTCATGGACXXXXXXXXXX

iklklnfkk*NKMTLFSSISSMSCSMTSSKSSLASFGIGTSMGSNSIACSVGSGSCGSGS
GSGSGGCGDLTGGAKSSGGSCGGKGGSHNHGHGHG---

Frame A:
iklklnfkk*NKMTLFSSISSMSCSMTSSKSSLASFGIGTSMGSNSIACSVGSGSCGSGS
GSGSGGCGDLTGGAKSSGGSCGGKGGSHNHGHGHG---


Frame B:
sn*n*ilknkik*hsfhqshqclvq*qvqnlvwhhlvleqvwvqiqlhvvlvvvvvvvvv
vvvvvvvvi*pvelnqvvvvveekadhiimvmvm---


Frame C:
qikikf*kik*ndtlfinlinvlfndkfki*fgiiwywnkygfkfncm*cw*w*lw*w*w
*w*wwlw*fnrws*ikww*lwrkrrit*swswsw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA586 (SSA586Q) /CSM/SS/SSA5-D/SSA586Q.Seq.d/                        210   9e-54
SSM360 (SSM360Q) /CSM/SS/SSM3-C/SSM360Q.Seq.d/                        194   5e-49
SSE449 (SSE449Q) /CSM/SS/SSE4-C/SSE449Q.Seq.d/                        194   5e-49
CHR881 (CHR881Q) /CSM/CH/CHR8-D/CHR881Q.Seq.d/                        194   5e-49
SSE102 (SSE102Q) /CSM/SS/SSE1-A/SSE102Q.Seq.d/                        155   4e-37
SSC246 (SSC246Q) /CSM/SS/SSC2-B/SSC246Q.Seq.d/                        155   4e-37
SSA602 (SSA602Q) /CSM/SS/SSA6-A/SSA602Q.Seq.d/                        155   4e-37
SLB664 (SLB664Q) /CSM/SL/SLB6-C/SLB664Q.Seq.d/                        155   4e-37
SHL790 (SHL790Q) /CSM/SH/SHL7-D/SHL790Q.Seq.d/                        155   4e-37
CHR471 (CHR471Q) /CSM/CH/CHR4-C/CHR471Q.Seq.d/                        155   4e-37

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X16827|X16827.1 Dictyostelium discoideum 2C mRNA.                155  1e-62  2
AC107020|AC107020.4 Homo sapiens 12 BAC RP11-271J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  0.91  1
AC025074|AC025074.2 Homo sapiens chromosome 18 clone RP11-74I21 map 18, LOW-PASS SEQUENCE SAMPLING.    44  0.91  1
AC024332|AC024332.2 Homo sapiens clone RP11-271J4, WORKING DRAFT SEQUENCE, 23 unordered pieces.    44  0.91  1
BM061473|BM061473.1 KS01031A05 KS01 Capsicum annuum cDNA, mRNA sequence.    42  3.6  1
CA525817|CA525817.1 KS12062A11 KS12 Capsicum annuum cDNA, mRNA sequence.    42  3.6  1
CA523706|CA523706.1 KS12027D07 KS12 Capsicum annuum cDNA, mRNA sequence.    42  3.6  1
BM064369|BM064369.1 KS01066C05 KS01 Capsicum annuum cDNA, mRNA sequence.    42  3.6  1
CA525624|CA525624.1 KS12058H12 KS12 Capsicum annuum cDNA, mRNA sequence.    42  3.6  1
AA898075|AA898075.1 NCM3H4T7 Mycelial Neurospora crassa cDNA clone NM3H4 3' end, mRNA sequence.    42  3.6  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 160,019,254

 psg: 0.92  gvh: 0.52  alm: 0.46  top: 0.47  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA586 is nuc

>SSA586F.Seq
ATCAAATTAAAATTAAATTTTAAAAAATAAAATAAAATGACACTCTTTTCATCAATCTCA
TCAATGTCTTGTTCAATGACAAGTTCAAAATCTAGTTTGGCATCATTTGGTATTGGAACA
AGTATGGGTTCAAATTCAATTGCATGTAGTGTTGGTAGTGGTAGTTGTGGTAGTGGTAGT
GGTAGTGGTAGTGGTGGTTGTGGTGATTTAACCGGTGGAGCTAAATCAAGTGGTGGTAGT
TGTGGAGGAAAAGGCGGATCACATAATCATGGTCATGGTCATGGAC----------