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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA585
Library SS
(Link to library)
Clone ID SSA585
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01910-1
Original site URL
Representative seq. ID SSA585F
(Link to Original site)
Representative DNA sequence 
>SSA585 (SSA585Q) /CSM/SS/SSA5-D/SSA585Q.Seq.d/
ATCAAATTGTAATAATTTTAAATATTTGTAACACTAAAAAAACATTGTAATATCAATATA
CATATAAAATGACTATTATTAAATCAATTACTTCAATAAACTCAAATACCAATAATATAA
AAAACAATATTGAAATTAATAATGTAAATAATGAAATTTCGAATCAAACAAAAAATAACA
TAACTGTGAATATGGGTGTTTTAATTTGTGCAAACGGTGGTGGTTGTAACATTATGTAAT
TCCAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAACAAAACTTTAAATTTAAA
TAAACCCAACCAGACTATTTATTTATTTATTAATTGTATTATATATAATAAAGTGTAATT
TAAAAATTACTTTTTTTTTTTTTTTAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1998. 7.21
Translated Amino Acid sequence 
qiviilnicntkktl*YQYTYKMTIIKSITSINSNTNNIKNNIEINNVNNEISNQTKNNI
TVNMGVLICANGGGCNIM*fqikkkkkkkkksktkl*i*inptrlfiyllivlyiikcnl
kitfffflkkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ikl**f*ifvtlkkhcninihik*lllnqllq*tqipii*ktilklim*imkfrikqkit
*l*iwvf*fvqtvvvvtlcnsk*kkkkkkkknqkqnfkfk*tqpdylfiy*lyyi**svi
*kllffff*kkk---


Frame B:
sncnnfkyl*h*knivisiyi*ndyy*inyfnklkyq*ykkqy*n**ck**nfesnkk*h
nceygcfnlckrwwl*hyvipnkkkkkkkkkiknktlnlnkpnqtiylfinciiynkv*f
knyfffffkkkk---


Frame C:
qiviilnicntkktl*YQYTYKMTIIKSITSINSNTNNIKNNIEINNVNNEISNQTKNNI
TVNMGVLICANGGGCNIM*fqikkkkkkkkksktkl*i*inptrlfiyllivlyiikcnl
kitfffflkkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK546 (SSK546Q) /CSM/SS/SSK5-B/SSK546Q.Seq.d/                        448   e-125
SSA585 (SSA585Q) /CSM/SS/SSA5-D/SSA585Q.Seq.d/                        448   e-125
SFA262 (SFA262Q) /CSM/SF/SFA2-C/SFA262Q.Seq.d/                         48   1e-04
VFA859 (VFA859Q) /CSM/VF/VFA8-C/VFA859Q.Seq.d/                         42   0.006
SSE167 (SSE167Q) /CSM/SS/SSE1-C/SSE167Q.Seq.d/                         42   0.006
SFJ615 (SFJ615Q) /CSM/SF/SFJ6-A/SFJ615Q.Seq.d/                         42   0.006
SFJ515 (SFJ515Q) /CSM/SF/SFJ5-A/SFJ515Q.Seq.d/                         42   0.006
SFJ391 (SFJ391Q) /CSM/SF/SFJ3-D/SFJ391Q.Seq.d/                         42   0.006
CHR859 (CHR859Q) /CSM/CH/CHR8-C/CHR859Q.Seq.d/                         42   0.006
AHG229 (AHG229Q) /CSM/AH/AHG2-B/AHG229Q.Seq.d/                         42   0.006
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   329  e-144  6
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    40  6e-11  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48  8e-09  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          46  4e-05  4
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    36  4e-05  10
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome.    38  1e-04  8
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                 38  1e-04  6
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34  2e-04  10
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    40  2e-04  6
AC079375|AC079375.24 Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42  3e-04  5
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_64(AC116979|pid:none) Dictyostelium discoideum chromoso...    53   3e-06
protein update 2009. 1.26
PSORT 

 psg: 0.76  gvh: 0.50  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for SSA585 is nuc
5' end seq. ID SSA585F
5' end seq. 
>SSA585F.Seq
ATCAAATTGTAATAATTTTAAATATTTGTAACACTAAAAAAACATTGTAATATCAATATA
CATATAAAATGACTATTATTAAATCAATTACTTCAATAAACTCAAATACCAATAATATAA
AAAACAATATTGAAATTAATAATGTAAATAATGAAATTTCGAATCAAACAAAAAATAACA
TAACTGTGAATATGGGTGTTTTAATTTGTGCAAACGGTGGTGGTTGTAACATTATGTAAT
TCCAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAACAAAACTTTAAATTTAAA
TAAACCCAACCAGACTATTTATTTATTTATTAATTGTATTATATATAATAAAGTGTAATT
TAAAAATTACTTTTTTTTTTTTTTTAAAAAAAAAAAAAA----------
Length of 5' end seq. 399
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -