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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA582
Library SS
(Link to library)
Clone ID SSA582
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SSA582F
(Link to Original site)
Representative DNA sequence 
>SSA582 (SSA582Q) /CSM/SS/SSA5-D/SSA582Q.Seq.d/
TGTAATAATAATAATAAATAAATAAATAAAATGAATATACTTAAAGCTTTAGTAGTTTTA
TGTTTTGTTTACGTTTCAATGGGTATCAAAGTTGATACTCAAACTGGTTTGAGATATACC
AGAGAATCATGTTATAAAAAGAGTGATAATCAACAAAGAGAACTCATTTTATCAACTCAA
CCAAAAGATATGAATCTTGAAGTTCCACAATCATGGGATTGGAGAAATGTAGGTGGTGTC
AATTATCTCACAATGAATCGTAATCAACATATTCCACAATATTGTGGTGGTTGTTGGGCT
TTCGCTTCAACAAGTTCTATCTCTGATAGAATTAAAATTCAACGTAAAGCTGCTTTCCCA
GATGTCAACGTTGCTCCACAACATCTTATTGATTGTAATGGTGGTGGTACATGTGATGGT
GGTGACCCAGGTGATGCTTTCGCTTTTATCAATGAAAATGGTATTGTTGATGAAACTTGC
AAACCATACCAAGCTAAAAATTTACCAGACGAATGTTCACCAGCTTGCAAAACCTGTAAT
CCAGATGGTACTTGTCAAGCTATTCCAGTTCATACCAATATCACTGTAACTGAATATGGT
TCAGTTAGAGGTGCTAAAGATATGATGGCTGAAATTTATGCTCGTGGTCCAATCGCTTGT
TCAATTGATGCTACCTCTAAXXXXXXXXXX
sequence update 1998. 7.21
Translated Amino Acid sequence 
cnnnnk*INKMNILKALVVLCFVYVSMGIKVDTQTGLRYTRESCYKKSDNQQRELILSTQ
PKDMNLEVPQSWDWRNVGGVNYLTMNRNQHIPQYCGGCWAFASTSSISDRIKIQRKAAFP
DVNVAPQHLIDCNGGGTCDGGDPGDAFAFINENGIVDETCKPYQAKNLPDECSPACKTCN
PDGTCQAIPVHTNITVTEYGSVRGAKDMMAEIYARGPIACSIDATS---
Translated Amino Acid sequence (All Frames) 
Frame A:
cnnnnk*INKMNILKALVVLCFVYVSMGIKVDTQTGLRYTRESCYKKSDNQQRELILSTQ
PKDMNLEVPQSWDWRNVGGVNYLTMNRNQHIPQYCGGCWAFASTSSISDRIKIQRKAAFP
DVNVAPQHLIDCNGGGTCDGGDPGDAFAFINENGIVDETCKPYQAKNLPDECSPACKTCN
PDGTCQAIPVHTNITVTEYGSVRGAKDMMAEIYARGPIACSIDATS---


Frame B:
viiiink*ik*iylkl**fyvlftfqwvsklilklv*dipenhvikrviinkensfyqln
qki*ilkfhnhgigem*vvsiisq*ivinifhnivvvvglslqqvlslielkfnvkllsq
mstllhnillivmvvvhvmvvtqvmlsllsmkmvllmklanhtklkiyqtnvhqlakpvi
qmvlvklfqfipisl*lnmvqlevlki*wlkfmlvvqslvqlmlpl---


Frame C:
*****ink*neyt*sfssfmfclrfngyqs*ysnwfeiyqriml*ke**stkrthfinst
kryes*sstimglekcrwcqlshnes*stystilwwllgfrfnkfyl**n*nst*scfpr
cqrcsttsy*l*wwwym*ww*pr*cfrfyq*kwyc**nlqtips*kftrrmftslqnl*s
rwylssysssyqyhcn*iwfs*rc*rydg*nlcswsnrlfn*cyl---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA582 (SSA582Q) /CSM/SS/SSA5-D/SSA582Q.Seq.d/                       1285   0.0
VSD113 (VSD113Q) /CSM/VS/VSD1-A/VSD113Q.Seq.d/                       1277   0.0
VFD780 (VFD780Q) /CSM/VF/VFD7-D/VFD780Q.Seq.d/                       1277   0.0
VFA818 (VFA818Q) /CSM/VF/VFA8-A/VFA818Q.Seq.d/                       1277   0.0
VSF638 (VSF638Q) /CSM/VS/VSF6-B/VSF638Q.Seq.d/                       1243   0.0
SSC608 (SSC608Q) /CSM/SS/SSC6-A/SSC608Q.Seq.d/                       1185   0.0
SSD547 (SSD547Q) /CSM/SS/SSD5-B/SSD547Q.Seq.d/                       1043   0.0
VSE347 (VSE347Q) /CSM/VS/VSE3-B/VSE347Q.Seq.d/                        775   0.0
FC-BL05 (FC-BL05Q) /CSM/FC/FC-BL/FC-BL05Q.Seq.d/                      511   e-144
VHF749 (VHF749Q) /CSM/VH/VHF7-C/VHF749Q.Seq.d/                        319   3e-86
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG224657|BG224657.1 kp49c02.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:F32B5.8 CE09855 CYSTEINE PROTEINASE ;, mRNA sequence.    50  3e-07  3
BI743660|BI743660.1 kx50c01.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XZI2 Q9XZI2 CATHEPSIN Z1 PREPROPROTEIN. ;, mRNA sequence.    62  9e-06  1
BI501371|BI501371.1 kx31d07.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O01850 O01850 SIMILAR TO CYSTEINE PROTEINASE. [1] ;, mRNA sequence.    62  9e-06  1
BI743363|BI743363.1 kx43b03.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O01850 O01850 SIMILAR TO CYSTEINE PROTEINASE. [1] ;, mRNA sequence.    62  9e-06  1
U71150|U71150.1 Onchocerca volvulus cysteine protease precursor mRNA, complete cds.    46  1e-05  3
BI500649|BI500649.1 rs79g11.y1 Prist pacificus mixed stage pAMP1 v1 Chiapelli McCarter Pristionchus pacificus cDNA 5' similar to TR:O01850 O01850 SIMILAR TO CYSTEINE PROTEINASE. [1] ;, mRNA sequence.    38  0.12  2
AV187298|AV187298.1 Caenorhabditis elegans cDNA clone:yk510a9 : 5' end, single read.    44  2.2  1
BV015422|BV015422.1 S212P6585FD10.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    44  2.2  1
BH046418|BH046418.1 RPCI-24-346J12.TJB RPCI-24 Mus musculus genomic clone RPCI-24-346J12, DNA sequence.    44  2.2  1
AV197806|AV197806.1 Caenorhabditis elegans cDNA clone:yk670h5 : 5' end, single read.    44  2.2  1
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY890922_1(AY890922|pid:none) Synthetic construct Homo sapiens c...   158   2e-37
BC025419_1(BC025419|pid:none) Homo sapiens cathepsin Z, mRNA (cD...   158   2e-37
BT019915_1(BT019915|pid:none) Homo sapiens cathepsin Z mRNA, com...   158   2e-37
(Q9UBR2) RecName: Full=Cathepsin Z;          EC=3.4.18.1; AltNam...   158   2e-37
AF009923_1(AF009923|pid:none) Homo sapiens preprocathepsin P mRN...   158   2e-37
AY891244_1(AY891244|pid:none) Synthetic construct Homo sapiens c...   158   2e-37
AF032906_1(AF032906|pid:none) Homo sapiens cathepsin Z precursor...   157   4e-37
BT075594_1(BT075594|pid:none) Osmerus mordax clone omor-eva-517-...   156   5e-37
AY226449_1(AY226449|pid:none) Fundulus heteroclitus cathepsin Z ...   155   8e-37
BT072668_1(BT072668|pid:none) Salmo salar clone ssal-rgf-535-275...   155   8e-37
protein update 2009. 6. 8
PSORT 

 psg: 0.97  gvh: 0.69  alm: 0.50  top: 0.40  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSA582 is exc
5' end seq. ID SSA582F
5' end seq. 
>SSA582F.Seq
TGTAATAATAATAATAAATAAATAAATAAAATGAATATACTTAAAGCTTTAGTAGTTTTA
TGTTTTGTTTACGTTTCAATGGGTATCAAAGTTGATACTCAAACTGGTTTGAGATATACC
AGAGAATCATGTTATAAAAAGAGTGATAATCAACAAAGAGAACTCATTTTATCAACTCAA
CCAAAAGATATGAATCTTGAAGTTCCACAATCATGGGATTGGAGAAATGTAGGTGGTGTC
AATTATCTCACAATGAATCGTAATCAACATATTCCACAATATTGTGGTGGTTGTTGGGCT
TTCGCTTCAACAAGTTCTATCTCTGATAGAATTAAAATTCAACGTAAAGCTGCTTTCCCA
GATGTCAACGTTGCTCCACAACATCTTATTGATTGTAATGGTGGTGGTACATGTGATGGT
GGTGACCCAGGTGATGCTTTCGCTTTTATCAATGAAAATGGTATTGTTGATGAAACTTGC
AAACCATACCAAGCTAAAAATTTACCAGACGAATGTTCACCAGCTTGCAAAACCTGTAAT
CCAGATGGTACTTGTCAAGCTATTCCAGTTCATACCAATATCACTGTAACTGAATATGGT
TCAGTTAGAGGTGCTAAAGATATGATGGCTGAAATTTATGCTCGTGGTCCAATCGCTTGT
TCAATTGATGCTACCTCTAA----------
Length of 5' end seq. 680
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -