>SSA572 (SSA572Q) /CSM/SS/SSA5-C/SSA572Q.Seq.d/
ATGAATTGGATAGTCTTACTGATTTATCTTTAAGAGAATTAGTTTTTACAAATAATCCAA
TTGCTCAACTTCCAAATTATAGAATGGAAGTTGCAAGAAAATTTCCAGATTTATTAATTC
TTGATGGTGTACCAATTGGACCAGAAGATTTTCCACCAAGTCCAATCCCACCATTAAGAC
CAAATTATTGTGATAGTCAAGAGAGACAACAATTTGCTTTTAGATTTTTAGAAAAATATT
TCACAACTTTTGATAAGTCTAGAGAAGAGATCATCAAGGCATACACTGAAGACTCAAAAT
TCTCTATGACCTTTATGGCTGATAGCAGTACCTTACCAATGCGTGGTTCTACTAAAGCTT
ATCAAAGAAATAATAGAAATTTAAAGAAGCCATCTGATGATATTAAGAAAACTCAACTTT
TATATTCAGGATATGATAATATTTATAACTTTTTCAAACTTTATCCAGTTACATCACATT
ATTTAGCTTCTTCTGTTATTGATACATTTTTGGCTCCTGGTTCACCATTATTAAATGTTG
TTATTCATGGCCATTACCTTGAAACTGCATTTAATTCTAAXXXXXXXXXX

ELDSLTDLSLRELVFTNNPIAQLPNYRMEVARKFPDLLILDGVPIGPEDFPPSPIPPLRP
NYCDSQERQQFAFRFLEKYFTTFDKSREEIIKAYTEDSKFSMTFMADSSTLPMRGSTKAY
QRNNRNLKKPSDDIKKTQLLYSGYDNIYNFFKLYPVTSHYLASSVIDTFLAPGSPLLNVV
IHGHYLETAFNS---

Frame A:
mnwivlliyl*en*flqiiqllnfqiiewklqenfqiy*flmvyqldqkifhqvqshh*d
qiivivkrdnnllldf*knisqllislekrssrhtlktqnsl*plwliavpyqcvvllkl
ikeiiei*rshlmilrklnfyiqdmiifitfsnfiqlhhii*lllllihfwllvhhy*ml
lfmaitlklhlil---


Frame B:
*ig*sy*fifkrisfyk*sncstskl*ngsckkisrfins*wctnwtrrfstksnptikt
kll**sretticf*ifrkifhnf**v*rrdhqgih*rlkilydlyg**qyltnawfy*sl
skk**kfkeai**y*enstfifri**yl*lfqtlssyitlfsffcy*yifgswftiikcc
yswplp*nci*f---


Frame C:
ELDSLTDLSLRELVFTNNPIAQLPNYRMEVARKFPDLLILDGVPIGPEDFPPSPIPPLRP
NYCDSQERQQFAFRFLEKYFTTFDKSREEIIKAYTEDSKFSMTFMADSSTLPMRGSTKAY
QRNNRNLKKPSDDIKKTQLLYSGYDNIYNFFKLYPVTSHYLASSVIDTFLAPGSPLLNVV
IHGHYLETAFNS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA572 (SSA572Q) /CSM/SS/SSA5-C/SSA572Q.Seq.d/                       1150   0.0
CHR203 (CHR203Q) /CSM/CH/CHR2-A/CHR203Q.Seq.d/                        797   0.0
VHQ118 (VHQ118Q) /CSM/VH/VHQ1-A/VHQ118Q.Seq.d/                         36   0.58
VHD454 (VHD454Q) /CSM/VH/VHD4-C/VHD454Q.Seq.d/                         36   0.58
VHC713 (VHC713Q) /CSM/VH/VHC7-A/VHC713Q.Seq.d/                         36   0.58
SSM477 (SSM477Q) /CSM/SS/SSM4-D/SSM477Q.Seq.d/                         36   0.58
SSH403 (SSH403Q) /CSM/SS/SSH4-A/SSH403Q.Seq.d/                         36   0.58
SSG441 (SSG441Q) /CSM/SS/SSG4-B/SSG441Q.Seq.d/                         36   0.58
SSC244 (SSC244Q) /CSM/SS/SSC2-B/SSC244Q.Seq.d/                         36   0.58
SSB889 (SSB889Q) /CSM/SS/SSB8-D/SSB889Q.Seq.d/                         36   0.58

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP004830|AP004830.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 9/10.    36  0.048  7
AC128291|AC128291.2 Rattus norvegicus clone CH230-391P8, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.084  2
AC097130|AC097130.6 Rattus norvegicus clone CH230-48M12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.15  2
AC004944|AC004944.1 Homo sapiens PAC clone RP5-991O23 from 8, complete sequence.    40  0.26  5
AL831789|AL831789.6 Zebrafish DNA sequence from clone CH211-207O21 Contains the 3' end  of a novel gene similar to FGF8 (fibroblast growth factor 8), a  novel gene for a RING finger protein, the lbx1h gene for lady  bird-like homeobox 1 homolog, (Drosophila) and eight CpG islands.    36  0.34  3
AC132035|AC132035.4 Rattus norvegicus clone CH230-358N22, *** SEQUENCING IN PROGRESS ***, 59 unordered pieces.    48  0.45  3
AC127626|AC127626.3 Rattus norvegicus clone CH230-452C12, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.48  1
CB081286|CB081286.1 hk49b12.g1 Gnetum leaves (NYBG) Gnetum gnemon cDNA clone hk49b12, mRNA sequence.    46  0.48  1
AP003137|AP003137.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 9/10.    36  0.74  6
BX530411|BX530411.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-147I23.    36  1.1  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN392322_412(FN392322|pid:none) Pichia pastoris GS115 chromosome...    86   6e-16
BC121302_1(BC121302|pid:none) Xenopus tropicalis nuclear RNA exp...    85   2e-15
BT059386_1(BT059386|pid:none) Salmo salar clone ssal-rgf-509-372...    85   2e-15
(P58797) RecName: Full=Nuclear RNA export factor 1; AltName: Ful...    81   2e-14
BC090720_1(BC090720|pid:none) Danio rerio nuclear RNA export fac...    79   7e-14
BC070656_1(BC070656|pid:none) Xenopus laevis hypothetical protei...    77   3e-13
CR380952_138(CR380952|pid:none) Candida glabrata strain CBS138 c...    75   2e-12
(Q99JX7) RecName: Full=Nuclear RNA export factor 1; AltName: Ful...    74   3e-12
AK133883_1(AK133883|pid:none) Mus musculus 8 days embryo whole b...    74   3e-12
(O88984) RecName: Full=Nuclear RNA export factor 1; AltName: Ful...    73   5e-12

 psg: 0.75  gvh: 0.46  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for SSA572 is cyt

>SSA572F.Seq
ATGAATTGGATAGTCTTACTGATTTATCTTTAAGAGAATTAGTTTTTACAAATAATCCAA
TTGCTCAACTTCCAAATTATAGAATGGAAGTTGCAAGAAAATTTCCAGATTTATTAATTC
TTGATGGTGTACCAATTGGACCAGAAGATTTTCCACCAAGTCCAATCCCACCATTAAGAC
CAAATTATTGTGATAGTCAAGAGAGACAACAATTTGCTTTTAGATTTTTAGAAAAATATT
TCACAACTTTTGATAAGTCTAGAGAAGAGATCATCAAGGCATACACTGAAGACTCAAAAT
TCTCTATGACCTTTATGGCTGATAGCAGTACCTTACCAATGCGTGGTTCTACTAAAGCTT
ATCAAAGAAATAATAGAAATTTAAAGAAGCCATCTGATGATATTAAGAAAACTCAACTTT
TATATTCAGGATATGATAATATTTATAACTTTTTCAAACTTTATCCAGTTACATCACATT
ATTTAGCTTCTTCTGTTATTGATACATTTTTGGCTCCTGGTTCACCATTATTAAATGTTG
TTATTCATGGCCATTACCTTGAAACTGCATTTAATTCTAA----------