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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA568
Library SS
(Link to library)
Clone ID SSA568
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04420-1
Original site URL
Representative seq. ID SSA568E
(Link to Original site)
Representative DNA sequence 
>SSA568 (SSA568Q) /CSM/SS/SSA5-C/SSA568Q.Seq.d/
CATTTTTCAAAGTTATGTAGTAATATAAATAGAAATAAAAAAATAAAAGTAAAAAAATAA
ATAATATACCAAATATATATATAAATTAATTAATAAATAAATAANATGTCAGAAAGCCAA
GATTTACCAGGTGCAATTGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTA
TGTGCCAAAGAATCTAGGCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTT
ACAGCAGCAAGTATAGATTTTAGTTCACATTCTGGTAGATCTACAATATCACCAAAGGAT
GTATTTCAAGCAATAGAAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATAT
TTAGCAGCACTCAAAAGTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAA
GAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
hfsklcsninrnkkikvkk*iiyqiyi*in**INXMSESQDLPGAIVNRIIKASLPEGVL
CAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDVFQAIEEIDFENFKPQLEEY
LAALKSEKEKEKEKEKEKEKE
Translated Amino Acid sequence (All Frames) 
Frame A:
hfsklcsninrnkkikvkk*iiyqiyi*in**INXMSESQDLPGAIVNRIIKASLPEGVL
CAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDVFQAIEEIDFENFKPQLEEY
LAALKSEKEKEKEKEKEKEKE


Frame B:
ifqsyvvi*ieikk*k*knk*ytkyiyklink*ixcqkakiyqvql*iellkllyqkgyy
vpknlg*llqkqqkfgfiilqqqv*ilvhilvdlqyhqrmyfkq*kk*ilkilnhn*rni
*qhskvkkkkkrkkrkrkkk


Frame C:
ffkvm**yk*k*knkskkinnipniyin*link*xvrkprftrcnck*ny*sfftrrgim
cqri*asyckssksldslsysskyrf*ftfw*iynitkgcissnrrnrf*kf*ttirgif
sstqk*krkrkgkrererkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA568 (SSA568Q) /CSM/SS/SSA5-C/SSA568Q.Seq.d/                        529   e-149
VSK484 (VSK484Q) /CSM/VS/VSK4-D/VSK484Q.Seq.d/                        515   e-145
SSB630 (SSB630Q) /CSM/SS/SSB6-B/SSB630Q.Seq.d/                         36   0.41
VSD701 (VSD701Q) /CSM/VS/VSD7-A/VSD701Q.Seq.d/                         34   1.6
VHK225 (VHK225Q) /CSM/VH/VHK2-B/VHK225Q.Seq.d/                         34   1.6
VHJ171 (VHJ171Q) /CSM/VH/VHJ1-C/VHJ171Q.Seq.d/                         34   1.6
VHI630 (VHI630Q) /CSM/VH/VHI6-B/VHI630Q.Seq.d/                         34   1.6
VHH424 (VHH424Q) /CSM/VH/VHH4-A/VHH424Q.Seq.d/                         34   1.6
VHG354 (VHG354Q) /CSM/VH/VHG3-C/VHG354Q.Seq.d/                         34   1.6
VHD777 (VHD777Q) /CSM/VH/VHD7-D/VHD777Q.Seq.d/                         34   1.6
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   416  e-139  3
CC405491|CC405491.1 PUEGI19TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa246C13, DNA sequence.    46  0.34  1
AC111462|AC111462.7 Rattus norvegicus clone CH230-213D24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.34  1
AC128726|AC128726.4 Rattus norvegicus clone CH230-251F4, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.73  2
AE007555|AE007555.1 Clostridium acetobutylicum ATCC824 section 43 of 356 of the complete genome.    46  0.84  2
AC087903|AC087903.25 Mus musculus chromosome 3 clone rp23-4p7 strain C57BL/6J, complete sequence.    44  1.3  1
AC093823|AC093823.2 Homo sapiens chromosome 2 clone RP11-384K20, complete sequence.    42  2.1  4
BE153447|BE153447.1 PM2-HT0338-131299-001-b01 HT0338 Homo sapiens cDNA, mRNA sequence.    38  2.6  2
AC105694|AC105694.3 Rattus norvegicus clone CH230-122G1, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    36  2.7  4
AP003595|AP003595.1 Nostoc sp. PCC 7120 DNA, complete genome, section 15/19.    46  4.5  4
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JQ9) RecName: Full=DNA polymerase epsilon subunit 3;        ...   175   5e-43
AK074782_1(AK074782|pid:none) Homo sapiens cDNA FLJ90301 fis, cl...    75   9e-13
BC059666_1(BC059666|pid:none) Danio rerio zgc:73351, mRNA (cDNA ...    75   9e-13
BT081762_1(BT081762|pid:none) Rana catesbeiana clone rcat-evr-52...    74   1e-12
BT057541_1(BT057541|pid:none) Salmo salar clone ssal-evf-556-341...    74   1e-12
(Q642A5) RecName: Full=DNA polymerase epsilon subunit 3;        ...    74   2e-12
AF261689_1(AF261689|pid:none) Homo sapiens DNA polymerase epsilo...    74   2e-12
(Q9JKP7) RecName: Full=DNA polymerase epsilon subunit 3;        ...    74   2e-12
AL732594_12(AL732594|pid:none) Mouse DNA sequence from clone RP2...    74   2e-12
AK074762_1(AK074762|pid:none) Homo sapiens cDNA FLJ90281 fis, cl...    73   3e-12
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSA568 is nuc
5' end seq. ID SSA568F
5' end seq. 
>SSA568F.Seq
CATTTTTCAAAGTTATGTAGTAATATAAATAGAAATAAAAAAATAAAAGTAAAAAAATAA
ATAATATACCAAATATATATATAAATTAATTAATAAATAAATAACATGTCAGAAAGCCAA
GATTTACCAGGTGCAATTGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTA
TGTGCCAAAGAATCTAGGCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTT
ACAGCAGCAAGTATAGATTTTAGTTCACATTCTGGTAGATCTACAATATCACCAAAGGAT
GTATTTCAAGCAATAGAAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATAT
TTAGCAGCACTCAAAAGTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAA
GAA
Length of 5' end seq. 423
3' end seq. ID SSA568Z
3' end seq. 
>SSA568Z.Seq
----------TATATATAAATTAATTAATAAATAAATAAAATGTCAGAAAGCCAAGATTT
ACCAGGTGCAATTGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTATGTGC
CAAAGAATCTAGGCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTTACAGC
AGCAAGTATAGATTTTAGTTCACATTCTGGTAGATCTACAATATCACCAAAGGATGTATT
TCAAGCAATAGAAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATATTTAGC
AGCACTCAAAAGTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAAGAA
Length of 3' end seq. 348
Connected seq. ID SSA568P
Connected seq. 
>SSA568P.Seq
CATTTTTCAAAGTTATGTAGTAATATAAATAGAAATAAAAAAATAAAAGTAAAAAAATAA
ATAATATACCAAATATATATATAAATTAATTAATAAATAAATAACATGTCAGAAAGCCAA
GATTTACCAGGTGCAATTGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTA
TGTGCCAAAGAATCTAGGCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTT
ACAGCAGCAAGTATAGATTTTAGTTCACATTCTGGTAGATCTACAATATCACCAAAGGAT
GTATTTCAAGCAATAGAAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATAT
TTAGCAGCACTCAAAAGTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAA
GAA----------TATATATAAATTAATTAATAAATAAATAAAATGTCAGAAAGCCAAGA
TTTACCAGGTGCAATTGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTATG
TGCCAAAGAATCTAGGCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTTAC
AGCAGCAAGTATAGATTTTAGTTCACATTCTGGTAGATCTACAATATCACCAAAGGATGT
ATTTCAAGCAATAGAAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATATTT
AGCAGCACTCAAAAGTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAAGA
A
Length of connected seq. 771
Full length Seq ID SSA568E
Full length Seq. 
>SSA568E.Seq
CATTTTTCAAAGTTATGTAGTAATATAAATAGAAATAAAAAAATAAAAGTAAAAAAATAA
ATAATATACCAAATATATATATAAATTAATTAATAAATAAATAANATGTCAGAAAGCCAA
GATTTACCAGGTGCAATTGTAAATAGAATTATTAAAGCTTCTTTACCAGAAGGGGTATTA
TGTGCCAAAGAATCTAGGCTAGCTATTGCAAAAGCAGCAAAAGTTTGGATTCATTATCTT
ACAGCAGCAAGTATAGATTTTAGTTCACATTCTGGTAGATCTACAATATCACCAAAGGAT
GTATTTCAAGCAATAGAAGAAATAGATTTTGAAAATTTTAAACCACAATTAGAGGAATAT
TTAGCAGCACTCAAAAGTGAAAAAGAAAAAGAAAAGGAAAAAGAGAAAGAGAAAGAAAAA
GAA
Length of full length seq. 423