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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA566
Library SS
(Link to library)
Clone ID SSA566
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03802-1
Original site URL
Representative seq. ID SSA566E
(Link to Original site)
Representative DNA sequence 
>SSA566 (SSA566Q) /CSM/SS/SSA5-C/SSA566Q.Seq.d/
TTCACAATTCCCAAAAAATAATATATAATAAAATGTTACCTCGTTCACTCAAATTAATCA
AAAAAGTTGGAGAATCAAATGGATTAAGAAATTTTGGGTCACAATCAAATTCATATACTC
TTCCAGATTTACCATATGATTATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGA
CTCTTCATCATAAGAAACATCATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATA
AATTATCTTCTGCTTCTTCAGCAAAAGATGTTGCTCAAATGATTGCTCTCCAAAGTGCAA
TTAAATTCAATGGTGGTGGTCACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAA
AAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAAT
ATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTT
CTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAAC
AAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGG
AACATGCTTATTATCTTGATTATAAAGAGCAGACTATGTTAAAAACATTTGGCAAATTGT
TAATTGGAAGAATGTTGCTGAAAGATATAACACTGCCAAAAAATAAATCATTTGTTTAAA
ATAGAATCAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
HNSQKIIYNKMLPRSLKLIKKVGESNGLRNFGSQSNSYTLPDLPYDYGALSPVISPEIMT
LHHKKHHQTYVNNLNIALDKLSSASSAKDVAQMIALQSAIKFNGGGHVNHSIFWTNLAPK
NQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQ
NQDPLSVSGYVPLLGIDVWEHAYYLDYKEQTMLKTFGKLLIGRMLLKDITLPKNKSFV*n
rikkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ftipkk*yiikcylvhsn*skklenqmd*eilghnqihilfqiyhmimvlfhqssvqkl*
lfiirniiklm*iilisl*inyllllqqkmllk*llskvqlnsmvvvt*itlsfgli*hq
kikmvvlhqvvhwlmllinnmdqlkn*lkkcqlkllqfkvlvgvg*vmikpmivslfkln
ktkihfqflvmfly*vlmfgnmliiliiksrlc*khlanc*leecc*ki*hcqkinhlfk
ieskkkkkkk


Frame B:
sqfpknni**nvtsftqinqkswrikwikkfwvtikfiyssrfti*lwcsftshqsrnyd
sss*etssnlck*s*yrfr*iifcffskrccsndcspkcn*iqwwwsrkslylld*fstk
ksrwwcctkwsig*cy**tiwin*kin*knvs*nycnsrfwlglvrl**sq*ssrysnst
kprstfsfwlcsfiry*clgtclls*l*radyvkniwqivnwknvaeryntakk*iiclk
*nqkkkkkkk


Frame C:
HNSQKIIYNKMLPRSLKLIKKVGESNGLRNFGSQSNSYTLPDLPYDYGALSPVISPEIMT
LHHKKHHQTYVNNLNIALDKLSSASSAKDVAQMIALQSAIKFNGGGHVNHSIFWTNLAPK
NQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQ
NQDPLSVSGYVPLLGIDVWEHAYYLDYKEQTMLKTFGKLLIGRMLLKDITLPKNKSFV*n
rikkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA566 (SSA566Q) /CSM/SS/SSA5-C/SSA566Q.Seq.d/                       1443   0.0
VSH246 (VSH246Q) /CSM/VS/VSH2-B/VSH246Q.Seq.d/                       1291   0.0
SLA587 (SLA587Q) /CSM/SL/SLA5-D/SLA587Q.Seq.d/                       1243   0.0
VSF871 (VSF871Q) /CSM/VS/VSF8-C/VSF871Q.Seq.d/                       1215   0.0
SSM325 (SSM325Q) /CSM/SS/SSM3-B/SSM325Q.Seq.d/                       1215   0.0
VSE536 (VSE536Q) /CSM/VS/VSE5-B/VSE536Q.Seq.d/                       1146   0.0
SSE504 (SSE504Q) /CSM/SS/SSE5-A/SSE504Q.Seq.d/                       1023   0.0
VSE837 (VSE837Q) /CSM/VS/VSE8-B/VSE837Q.Seq.d/                        959   0.0
SSC249 (SSC249Q) /CSM/SS/SSC2-C/SSC249Q.Seq.d/                        819   0.0
VSA601 (VSA601Q) /CSM/VS/VSA6-A/VSA601Q.Seq.d/                        747   0.0
own update 2001. 5.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI506560|BI506560.1 BB170021B20G02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170021B20G02 5', mRNA sequence.    56  1e-22  4
CB097760|CB097760.1 ku44g07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    76  7e-22  4
AL440909|AL440909.1 T7 end of clone BD0AA015F01 of library BD0AA from strain CBS 94 of  Candida tropicalis.    50  1e-14  4
AE006277|AE006277.1 Lactococcus lactis subsp. lactis IL1403 section 39 of 218 of the complete genome.    58  9e-13  3
U17388|U17388.1 Lactococcus lactis superoxide dismutase (sodA) gene, complete cds; and unknown genes.    58  2e-10  2
BM361618|BM361618.1 A00906-R Appressorium stage EST library of Blumeria graminis f.sp. hordei Blumeria graminis f. sp. hordei cDNA similar to Superoxide dismutase, mn , mitochondrial pr, mRNA sequence.    58  3e-10  2
BM361518|BM361518.1 A00811-R Appressorium stage EST library of Blumeria graminis f.sp. hordei Blumeria graminis f. sp. hordei cDNA similar to Superoxide dismutase, mn , mitochondrial pr, mRNA sequence.    58  3e-10  2
AF327338|AF327338.1 Blumeria graminis superoxide dismutase (Sod1) gene, complete cds.    58  6e-10  2
CB888809|CB888809.1 taa42a04.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:SODM_HUMAN P04179 SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    42  7e-10  3
AL897671|AL897671.1 Xenopus tropicalis EST, clone TEgg102o13 5'.    50  2e-09  3
dna update 2003. 7.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX908798_270(BX908798|pid:none) Parachlamydia-related symbiont U...   249   3e-73
BT083315_1(BT083315|pid:none) Anoplopoma fimbria clone afim-evh-...   218   8e-61
FJ941827_1(FJ941827|pid:none) Hemibarbus mylodon manganese super...   214   4e-60
BC075257_1(BC075257|pid:none) Xenopus tropicalis superoxide dism...   213   1e-59
AY675508_1(AY675508|pid:none) Paragonimus westermani Mn-SOD mRNA...   215   2e-59
AF242310_1(AF242310|pid:none) Euphorbia esula manganese superoxi...   217   4e-59
BT082354_1(BT082354|pid:none) Anoplopoma fimbria clone afim-evh-...   212   4e-59
EF633506_1(EF633506|pid:none) Ginkgo biloba superoxide dismutase...   217   5e-59
AY362041_1(AY362041|pid:none) Xenopus laevis manganese superoxid...   212   1e-58
BC073330_1(BC073330|pid:none) Xenopus laevis MGC80739 protein, m...   209   2e-58
protein update 2009. 7. 6
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSA566 is cyt
5' end seq. ID SSA566F
5' end seq. 
>SSA566F.Seq
TTCACAATTCCCAAAAAATAATATATAATAAAATGTTACCTCGTTCACTCAAATTAATCA
AAAAAGTTGGAGAATCAAATGGATTAAGAAATTTTGGGTCACAATCAAATTCATATACTC
TTCCAGATTTACCATATGATTATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGA
CTCTTCATCATAAGAAACATCATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATA
AATTATCTTCTGCTTCTTCAGCAAAAGATGTTGCTCAAATGATTGCTCTCCAAAGTGCAA
TTAAATTCAATGGTGGTGGTCACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAA
AAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAAT
ATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTT
CTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAAC
AAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGG
ACATGCTTATTATCTTGATTATAA----------
Length of 5' end seq. 624
3' end seq. ID SSA566Z
3' end seq. 
>SSA566Z.Seq
----------CACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAAAAAATCAAGA
TGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAATATGGATCAAT
TGAAAAATTAATTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTTCTGGTTGGGG
TTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAACAAAACCAAGA
TCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGGAACATGCTTA
TTATCTTGATTATAAAAATGTTAGAGCAGACTATGTTAAAAACATTTGGCAAATTGTTAA
TTGGAAGAATGTTGCTGAAAGATATAACACTGCCAAAAAATAAATCATTTGTTTAAAATA
GAATCAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 439
Connected seq. ID SSA566P
Connected seq. 
>SSA566P.Seq
TTCACAATTCCCAAAAAATAATATATAATAAAATGTTACCTCGTTCACTCAAATTAATCA
AAAAAGTTGGAGAATCAAATGGATTAAGAAATTTTGGGTCACAATCAAATTCATATACTC
TTCCAGATTTACCATATGATTATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGA
CTCTTCATCATAAGAAACATCATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATA
AATTATCTTCTGCTTCTTCAGCAAAAGATGTTGCTCAAATGATTGCTCTCCAAAGTGCAA
TTAAATTCAATGGTGGTGGTCACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAA
AAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAAT
ATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTT
CTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAAC
AAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGG
ACATGCTTATTATCTTGATTATAA----------CACGTAAATCACTCTATCTTTTGGAC
TAATTTAGCACCAAAAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGC
TATTAATAAACAATATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTAC
TGCAATTCAAGGTTCTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGT
TATTCAAACTCAACAAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGG
TATTGATGTTTGGGAACATGCTTATTATCTTGATTATAAAAATGTTAGAGCAGACTATGT
TAAAAACATTTGGCAAATTGTTAATTGGAAGAATGTTGCTGAAAGATATAACACTGCCAA
AAAATAAATCATTTGTTTAAAATAGAATCAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1063
Full length Seq ID SSA566E
Full length Seq. 
>SSA566E.Seq
TTCACAATTCCCAAAAAATAATATATAATAAAATGTTACCTCGTTCACTCAAATTAATCA
AAAAAGTTGGAGAATCAAATGGATTAAGAAATTTTGGGTCACAATCAAATTCATATACTC
TTCCAGATTTACCATATGATTATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGA
CTCTTCATCATAAGAAACATCATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATA
AATTATCTTCTGCTTCTTCAGCAAAAGATGTTGCTCAAATGATTGCTCTCCAAAGTGCAA
TTAAATTCAATGGTGGTGGTCACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAA
AAAATCAAGATGGTGGTGTTGCACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAAT
ATGGATCAATTGAAAAATTAATTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTT
CTGGTTGGGGTTGGTTAGGTTATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAAC
AAAACCAAGATCCACTTTCAGTTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGG
AACATGCTTATTATCTTGATTATAAAGAGCAGACTATGTTAAAAACATTTGGCAAATTGT
TAATTGGAAGAATGTTGCTGAAAGATATAACACTGCCAAAAAATAAATCATTTGTTTAAA
ATAGAATCAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 752