>SSA564 (SSA564Q) /CSM/SS/SSA5-C/SSA564Q.Seq.d/
AAACATTGAAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTGGTGCTCGTTC
TGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAG
ATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCA
AGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGG
TTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGC
TAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAA
AGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGT
TTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATAT
CAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTC
TCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAAC
TACAAAAGGTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATTAAXXXXXXX
XXX

NIEIRDAIGHENMYIFGARSEEVNKVKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQ
DIINSVSGGNDHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIK
EYAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSAS
PLSVISGGDKTNNTLKPKQTTKGFNIGGQPGNPTN*l---

Frame A:
kh*ns*chws*kyvhlwcsf*rgqqskenys*wkihtrh*mgscfnry*rryfwst*tip
ryyqlc*wwq*slhs*l*fwfllgyskfn*srfqr*s*mg*kinygfsllw*iqfr*nh*
rvcstnlgy*rmeetrssssfk*rssffissttiwftk*yqcyln*kiitfnfc*tnfcf
siicylww**nqqhfktktnykrf*ywwstr*snkli---


Frame B:
NIEIRDAIGHENMYIFGARSEEVNKVKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQ
DIINSVSGGNDHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIK
EYAQQIWGIEEWKRPGPVPVSNEEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSAS
PLSVISGGDKTNNTLKPKQTTKGFNIGGQPGNPTN*l---


Frame C:
tlkfvmplvmkictslvlvlkrstk*rklfmmenshqtldglvf*pllkkillvhmnnsk
ilstllvvamiitflvmilvltwifkiqlikiskielnglknqlwlqfvvvnsvqieplk
smlnkfgvlkngrdqvqfqfqmkklvly*fhhhlvhqmismlsqlkdyhl*lllnkllll
hyllslvvikpttl*nqnklqkvlilvvnqviqqin---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA564 (SSA564Q) /CSM/SS/SSA5-C/SSA564Q.Seq.d/                       1294   0.0
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/                       1294   0.0
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/                       1294   0.0
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/                       1294   0.0
CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/                       1294   0.0
AHM406 (AHM406Q) /CSM/AH/AHM4-A/AHM406Q.Seq.d/                       1294   0.0
AHB359 (AHB359Q) /CSM/AH/AHB3-C/AHB359Q.Seq.d/                       1294   0.0
SHL702 (SHL702Q) /CSM/SH/SHL7-A/SHL702Q.Seq.d/                       1279   0.0
SHK334 (SHK334Q) /CSM/SH/SHK3-B/SHK334Q.Seq.d/                       1279   0.0
SHK175 (SHK175Q) /CSM/SH/SHK1-D/SHK175Q.Seq.d/                       1279   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.  1294  0.0  1
BE470067|BE470067.1 IpHdk03092 Head kidney cDNA library Ictalurus punctatus cDNA 5' similar to Dual specificity phosphatase 10 (DUSP10), mRNA sequence.    50  0.035  1
AX251513|AX251513.1 Sequence 481 from Patent WO0168912.           48  0.14  1
AF506028|AF506028.1 Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence.    42  0.41  4
AC111639|AC111639.4 Rattus norvegicus clone CH230-100I8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.54  1
AX344572|AX344572.1 Sequence 23 from Patent WO0200932.            46  0.54  1
BI971157|BI971157.1 GM830012B10F11 Gm-r1083 Glycine max cDNA clone Gm-r1083-4509 3', mRNA sequence.    46  0.54  1
BE021617|BE021617.1 sm60c03.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-8285 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46  0.54  1
AP001561|AP001561.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete sequences.    46  0.54  1
AC106389|AC106389.4 Rattus norvegicus clone CH230-140G24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.54  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos...   122   1e-26
EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho...   121   2e-26
(Q9SD76) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   118   2e-25
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c...   117   4e-25
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos...   117   4e-25
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou...   117   4e-25
(P32811) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   116   7e-25
DQ279079_1(DQ279079|pid:none) Chlamydomonas reinhardtii PhoA (PH...   116   7e-25
EU857639_1(EU857639|pid:none) Zea mays starch phosphorylase 2 pr...   115   1e-24
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme;   ...   115   1e-24

 psg: 0.75  gvh: 0.38  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSA564 is nuc

>SSA564F.Seq
AAACATTGAAATTCGTGATGCCATTGGTCATGAAAATATGTACATCTTTGGTGCTCGTTC
TGAAGAGGTCAACAAAGTAAAGAAAATTATTCATGATGGAAAATTCACACCAGACACTAG
ATGGGCTCGTGTTTTAACCGCTATTAAAGAAGATACTTTTGGTCCACATGAACAATTCCA
AGATATTATCAACTCTGTTAGTGGTGGCAATGATCATTACATTCTTAGTTATGATTTTGG
TTCTTACTTGGATATTCAAAATTCAATTGATCAAGATTTCAAAGATAGAGCTAAATGGGC
TAAAAAATCAATTATGGCTTCAGTTTGTTGTGGTAAATTCAGTTCAGATAGAACCATTAA
AGAGTATGCTCAACAAATTTGGGGTATTGAAGAATGGAAGAGACCAGGTCCAGTTCCAGT
TTCAAATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAATGATAT
CAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCTGCTTC
TCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAACAAAC
TACAAAAGGTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATTAA-------
---