SSA563
Library SS
(Link to library)
Clone ID SSA563
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSA563E
(Link to Original site)
Representative DNA sequence
>SSA563 (SSA563Q) /CSM/SS/SSA5-C/SSA563Q.Seq.d/
GATTCAGAAAAAATTAAAAAAGCCAGAGATTTTTTGTCTGGAAAGGAAACCAATGAAGTT
CATGTAATGGGTAGAATTAGAAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATT
CTTGACCCAGATACAATCACATTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACT
ATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGG
TGCCCATGGTCTTCAAAACTAACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAAATA
AAATACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTAT
TAAACAAAAGTTTTTATAAAAAA
sequence update 1997. 8. 5
Translated Amino Acid sequence
DSEKIKKARDFLSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDAST
IYVEDHLDEACGAFLPGCFWCPWSSKLTREIKI*tirvkikys*lnliklnt*ifnnkvy
*tkvfik


Translated Amino Acid sequence (All Frames)
Frame A:
DSEKIKKARDFLSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDAST
IYVEDHLDEACGAFLPGCFWCPWSSKLTREIKI*tirvkikys*lnliklnt*ifnnkvy
*tkvfik


Frame B:
iqkklkkpeifclerkpmkfm*wvelerdlkaiiqsiplfltqiqshffpwllkfvmlql
fm*kitlmrpvvlssqvasgahglqn*qeklkfkl*e*k*nthd*i*sn*ilkyliikfi
kqkfl*k


Frame C:
frkn*ksqrffvwkgnq*sscng*n*ket*kl*skvflys*prynhiffhgy*sl*cfny
lcrrsp**glwcfpprlllvpmvfktnkrn*nlnyksknkilmikfnqikylni***sll
nksfykk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA563 (SSA563Q) /CSM/SS/SSA5-C/SSA563Q.Seq.d/ 531 e-150
SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/ 507 e-143
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/ 507 e-143
SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/ 507 e-143
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/ 507 e-143
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/ 507 e-143
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/ 507 e-143
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/ 507 e-143
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/ 507 e-143
SSH825 (SSH825Q) /CSM/SS/SSH8-B/SSH825Q.Seq.d/ 507 e-143

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds. 289 e-130 3
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 109 3e-54 7
AL808141|AL808141.8 Zebrafish DNA sequence from clone CH211-260N19. 50 0.020 1
AL928701|AL928701.7 Zebrafish DNA sequence from clone CH211-201H21. 50 0.020 1
AC094380|AC094380.6 Rattus norvegicus clone CH230-3P6, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 46 0.31 1
AC125803|AC125803.4 Rattus norvegicus clone CH230-8M13, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 0.31 1
BX571697|BX571697.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 50 0.46 2
AC096079|AC096079.6 Rattus norvegicus clone CH230-33I23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 44 1.2 1
AC137010|AC137010.1 Rattus norvegicus clone CH230-unknown, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 1.2 1
AQ411929|AQ411929.1 CpG0915A CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence. 44 1.2 1
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 185 5e-46
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 131 7e-30
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 116 2e-25
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom... 46 4e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 39 0.044
FN357305_20(FN357305|pid:none) Schistosoma mansoni genome sequen... 32 9.2

protein update 2009. 7. 6
PSORT

psg: 0.62 gvh: 0.63 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SSA563 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSA563E
Full length Seq.
>SSA563E.Seq
GATTCAGAAAAAATTAAAAAAGCCAGAGATTTTTTGTCTGGAAAGGAAACCAATGAAGTT
CATGTAATGGGTAGAATTAGAAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATT
CTTGACCCAGATACAATCACATTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACT
ATTTATGTAGAAGATCACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGG
TGCCCATGGTCTTCAAAACTAACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAAATA
AAATACTCATGATTAAATTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTAT
TAAACAAAAGTTTTTATAAAAAA
Length of full length seq. 383