>SSA545 (SSA545Q) /CSM/SS/SSA5-B/SSA545Q.Seq.d/
TAACCTCTGACCAAAAACAGAATTACGGTTGTTATGCTGCAGAACCTAATGACGTGCAAC
TGGCGCGCTATTTTCATCTTGATGAACGGGATCTGGCCTTCATTAACCAACGACGGGGCA
AACATAATAGGCTGGGCATTGCGCTTCAGCTCACCACAGCCCGTTTTCTGGGAACATTTC
TGACGGATTTAACTCAGGTTCTGCCTGGTGTTCAACATTTTGTCGCGGTACAGCTTAATA
TCCACCGTCCAGAAGTTCTCTCCCGCTATGCTGAACGGGACACTACCCTTAGAGAACATA
CTGCATTAATTAAGGAATATTACGGCTATCATGAATTTGGTGATTTTCCATGGTCTTTCC
GCCTGAAGTGTCTGCTATATACCCGGGCGTGGCTCAGTAATGAGCGACCGGGTCTGATGT
TTGATTTTGCCACTGCATGGTTGCTTCAAAATAAGGTATTACTGCCCGGAGCAACCACAC
TAGTACGTCTCATCAGTGAAATTCGTGAAAGGGCAAATCAGCGGCTGTGGAAAAAGCTGG
CCGCACTGCCGAACAAATGGCAGGCAGCTCAAGTGATGGAGCTTCTGGTCATTCCGGAAG
GTCAGCGTGTATCAGCACTGGAACAGTTGAAAXXXXXXXXXX

TSDQKQNYGCYAAEPNDVQLARYFHLDERDLAFINQRRGKHNRLGIALQLTTARFLGTFL
TDLTQVLPGVQHFVAVQLNIHRPEVLSRYAERDTTLREHTALIKEYYGYHEFGDFPWSFR
LKCLLYTRAWLSNERPGLMFDFATAWLLQNKVLLPGATTLVRLISEIRERANQRLWKKLA
ALPNKWQAAQVMELLVIPEGQRVSALEQL---

Frame A:
*pltknritvvmlqnlmtcnwraifilmngiwpsltndganiigwalrfsspqpvfwehf
*ri*lrfclvfnilsryslistvqkfspamlngtlplenilh*lrnitaimnlvifhgls
a*svcyipgrgsvmsdrv*clilplhgcfkiryycpeqph*yvssvkfvkgqisgcgksw
phcrtngrqlk*wsfwsfrkvsvyqhwns*---


Frame B:
nl*pktelrllccrt**ratgalfss**tgsglh*pttgqt**aghcasahhspfsgnis
dgfnsgsawcstfcrgta*yppsrsslplc*tghyp*rtycin*gilrls*iw*fsmvfp
pevsaiypgvaq**atgsdv*fchcmvask*gitarsnhtstshq*ns*kgksaavekag
rtaeqmagsssdgasghsgrsacistgtve---


Frame C:
TSDQKQNYGCYAAEPNDVQLARYFHLDERDLAFINQRRGKHNRLGIALQLTTARFLGTFL
TDLTQVLPGVQHFVAVQLNIHRPEVLSRYAERDTTLREHTALIKEYYGYHEFGDFPWSFR
LKCLLYTRAWLSNERPGLMFDFATAWLLQNKVLLPGATTLVRLISEIRERANQRLWKKLA
ALPNKWQAAQVMELLVIPEGQRVSALEQL---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA545 (SSA545Q) /CSM/SS/SSA5-B/SSA545Q.Seq.d/                       1253   0.0
VHQ460 (VHQ460Q) /CSM/VH/VHQ4-C/VHQ460Q.Seq.d/                         32   9.9
VHP317 (VHP317Q) /CSM/VH/VHP3-A/VHP317Q.Seq.d/                         32   9.9
VHN378 (VHN378Q) /CSM/VH/VHN3-D/VHN378Q.Seq.d/                         32   9.9
VHL849 (VHL849Q) /CSM/VH/VHL8-C/VHL849Q.Seq.d/                         32   9.9
VHJ452 (VHJ452Q) /CSM/VH/VHJ4-C/VHJ452Q.Seq.d/                         32   9.9
VHJ263 (VHJ263Q) /CSM/VH/VHJ2-C/VHJ263Q.Seq.d/                         32   9.9
VHE612 (VHE612Q) /CSM/VH/VHE6-A/VHE612Q.Seq.d/                         32   9.9
VHE537 (VHE537Q) /CSM/VH/VHE5-B/VHE537Q.Seq.d/                         32   9.9
VHD853 (VHD853Q) /CSM/VH/VHD8-C/VHD853Q.Seq.d/                         32   9.9

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC118625|AC118625.3 Mus musculus clone RP24-74J15, LOW-PASS SEQUENCE SAMPLING.  1245  0.0  1
AC006179|AC006179.1 Homo sapiens chromosome 10 clone LA10NC01_173_E_2 map 10q24.2-24.3, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.  1245  0.0  1
AC006175|AC006175.1 Homo sapiens chromosome 10 clone LA10NC01_124_B_11 map 10q25.3-10q26.1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.  1245  0.0  1
AC006094|AC006094.1 Homo sapiens chromosome 10 clone LA10NC01_61_B_6 map 10q25.3-10q26.1, WORKING DRAFT SEQUENCE, 1 ordered pieces.  1245  0.0  1
X60200|X60200.1 E. coli transposon Tn1000 (gamma delta) tnpR and tnpA genes for  resolvase  and transposase.  1245  0.0  1
D16449|D16449.1 Escherichia coli Transposon gamma delta tnpA, tnpR and tnpX genes for transposase, resolvase and ORF, complete cds.  1245  0.0  1
AP001918|AP001918.1 F plasmid genomic DNA, complete sequence.   1245  0.0  1
AC103582|AC103582.17 Homo sapiens chromosome 22 clone ll22nc01-74c1 map 22q11, complete sequence.  1245  0.0  1
AL078473|AL078473.2 Homo sapiens chromosome 21 Cosmid LLNCO21A112.  1245  0.0  1
AC013651|AC013651.9 Homo sapiens chromosome 2 clone RP11-429H14 map 2, LOW-PASS SEQUENCE SAMPLING.  1197  0.0  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q00037) RecName: Full=Transposase for transposon gamma-delta; A...   423   e-117
FJ223605_72(FJ223605|pid:none) Klebsiella pneumoniae strain 12 p...   381   e-104
AM905950_102(AM905950|pid:none) Yersinia enterocolitica plasmid ...   381   e-104
AE017043_83(AE017043|pid:none) Yersinia pestis biovar Microtus s...   349   4e-95
Y17830_6(Y17830|pid:none) Pseudomonas sp. BW13 mercury resistanc...   253   2e-66
DQ174113_1(DQ174113|pid:none) Pseudomonas putida transposon Tn13...   246   5e-64
CP000649_19(CP000649|pid:none) Klebsiella pneumoniae subsp. pneu...   246   5e-64
AM886293_128(AM886293|pid:none) Escherichia coli 1540 plasmid pI...   246   5e-64
FJ410927_1(FJ410927|pid:none) Klebsiella pneumoniae transposon T...   246   5e-64
AJ519722_1(AJ519722|pid:none) Yersinia enterocolitica partial cr...   246   5e-64

 psg: 0.71  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSA545 is cyt

>SSA545F.Seq
TAACCTCTGACCAAAAACAGAATTACGGTTGTTATGCTGCAGAACCTAATGACGTGCAAC
TGGCGCGCTATTTTCATCTTGATGAACGGGATCTGGCCTTCATTAACCAACGACGGGGCA
AACATAATAGGCTGGGCATTGCGCTTCAGCTCACCACAGCCCGTTTTCTGGGAACATTTC
TGACGGATTTAACTCAGGTTCTGCCTGGTGTTCAACATTTTGTCGCGGTACAGCTTAATA
TCCACCGTCCAGAAGTTCTCTCCCGCTATGCTGAACGGGACACTACCCTTAGAGAACATA
CTGCATTAATTAAGGAATATTACGGCTATCATGAATTTGGTGATTTTCCATGGTCTTTCC
GCCTGAAGTGTCTGCTATATACCCGGGCGTGGCTCAGTAATGAGCGACCGGGTCTGATGT
TTGATTTTGCCACTGCATGGTTGCTTCAAAATAAGGTATTACTGCCCGGAGCAACCACAC
TAGTACGTCTCATCAGTGAAATTCGTGAAAGGGCAAATCAGCGGCTGTGGAAAAAGCTGG
CCGCACTGCCGAACAAATGGCAGGCAGCTCAAGTGATGGAGCTTCTGGTCATTCCGGAAG
GTCAGCGTGTATCAGCACTGGAACAGTTGAAA----------