>SSA536 (SSA536Q) /CSM/SS/SSA5-B/SSA536Q.Seq.d/
XXXXXXXXXXAAAAATGCCTGATATTAATCCACTTACTCCAATTCCAGATAATAACTATT
ATGATCAAGGTACTTATTTCCTTGTAACTATATCCCCATCAACATGGGCTGCACTTGGTA
TTGGCCTTTCATTAGCCTTATCAGTTGTTGGTTCAGCTTGGGGTATTTGGGTCACTGCAT
CATCACTTATGGGTGCTGCCGTTAAAGAACCAAGAATTCGTTCGGAAAATATTATTAGTA
TTATTTTCTGTGAAGCTGTAGCTATTTATGGTATTATTTTAGCTATTATTTTAAATGGTA
AAATCGATAAATTNTTAAATATTTGGGATCCAGCTTCCGATTATATGGCCGGTTACATGA
TGTTTGGTGCCGGTATCACTGTTGGTCTTTGTAATGTTTTTTCAGGTGTTTGCGTAGGTA
TTGCTGGTAGTGGTTGTGCATTGGGTGACGCTCAAAATCCATCACTTTTTGTTAAAATGC
TTATTATTGAAATTTTCGCTGGTGCCTTAGGTCTTTACGCTGTTATTGTCGGTATTCTTA
TGACAACTAACGCTCTTGGTGTCACACAACAACCTGCACTCAAACCATAAAGATAAATTT
AAATTAATAAATAAAAAAAAATAAAATAAAATAAAATAAAAAAAATAAAATAAAAAAAAA
TAA

---KMPDINPLTPIPDNNYYDQGTYFLVTISPSTWAALGIGLSLALSVVGSAWGIWVTAS
SLMGAAVKEPRIRSENIISIIFCEAVAIYGIILAIILNGKIDKXLNIWDPASDYMAGYMM
FGAGITVGLCNVFSGVCVGIAGSGCALGDAQNPSLFVKMLIIEIFAGALGLYAVIVGILM
TTNALGVTQQPALKP*r*i*ink*kkik*nkikkik*kki

Frame A:
---KMPDINPLTPIPDNNYYDQGTYFLVTISPSTWAALGIGLSLALSVVGSAWGIWVTAS
SLMGAAVKEPRIRSENIISIIFCEAVAIYGIILAIILNGKIDKXLNIWDPASDYMAGYMM
FGAGITVGLCNVFSGVCVGIAGSGCALGDAQNPSLFVKMLIIEIFAGALGLYAVIVGILM
TTNALGVTQQPALKP*r*i*ink*kkik*nkikkik*kki


Frame B:
---kclilihllqfqiitimikvlisl*lyphqhglhlvlafh*pyqllvqlgvfgslhh
hlwvlplknqefvrkillvlfsvkl*lfmvlf*llf*mvksinx*ifgiqlpiiwpvt*c
lvpvsllvfvmffqvfa*vllvvvvhwvtlkihhfllkclllkfslvp*vftlllsvfl*
qltllvshnnlhsnhkdkfklinkkk*nkik*kk*nkkk*


Frame C:
---na*y*stysnsr**ll*srylfpcnyipinmgctwywpfisliscwfslgylghcii
tygccr*rtknsfgkyy*yyfl*scsylwyyfsyyfkw*nr*ixkylgssfrlygrlhdv
wcryhcwsl*cffrclrrycw*wlcig*rsksitfc*nayy*nfrwclrslrcycrysyd
n*rswchtttctqtikinln**ikknkik*nkknkikkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA536 (SSA536Q) /CSM/SS/SSA5-B/SSA536Q.Seq.d/                       1136   0.0
VSD723 (VSD723Q) /CSM/VS/VSD7-A/VSD723Q.Seq.d/                       1120   0.0
SSJ541 (SSJ541Q) /CSM/SS/SSJ5-B/SSJ541Q.Seq.d/                       1120   0.0
SSA525 (SSA525Q) /CSM/SS/SSA5-B/SSA525Q.Seq.d/                       1120   0.0
SLD255 (SLD255Q) /CSM/SL/SLD2-C/SLD255Q.Seq.d/                       1120   0.0
SSA331 (SSA331Q) /CSM/SS/SSA3-B/SSA331Q.Seq.d/                       1116   0.0
SSJ840 (SSJ840Q) /CSM/SS/SSJ8-B/SSJ840Q.Seq.d/                       1098   0.0
VSD875 (VSD875Q) /CSM/VS/VSD8-D/VSD875Q.Seq.d/                       1078   0.0
VSF294 (VSF294Q) /CSM/VS/VSF2-D/VSF294Q.Seq.d/                       1053   0.0
FC-AN11 (FC-AN11Q) /CSM/FC/FC-AN/FC-AN11Q.Seq.d/                     1047   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   359  0.0  5
AW773378|AW773378.1 rp06a10.y1 Kloek Brook Zeldia punctata SL1 Zeldia punctata cDNA 5' similar to WP:T01H3.1 CE03595 PROTEOLIPID PROTEIN PPA1 LIKE PROTEIN ;, mRNA sequence.    54  2e-07  2
BP188642|BP188642.1 Dugesia japonica cDNA, clone: 05069_HH, expressed in the head.    62  9e-06  1
CB404143|CB404143.1 OSTR018F2_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46  4e-05  2
CB385132|CB385132.1 OSTF018F2_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46  4e-05  2
BJ106850|BJ106850.1 Caenorhabditis elegans cDNA clone:yk1089g04 : 5' end, single read.    46  4e-05  2
BJ134542|BJ134542.1 Caenorhabditis elegans cDNA clone:yk1089g04 : 3' end, single read.    46  5e-05  2
AB000919|AB000919.1 Caenorhabditis elegans mRNA for VHA-4, complete cds.    46  7e-05  2
BG888264|BG888264.1 EST514115 cSTD Solanum tuberosum cDNA clone cSTD9O4 5' sequence, mRNA sequence.    58  1e-04  1
CB080871|CB080871.1 hk43d03.g1 Gnetum leaves (NYBG) Gnetum gnemon cDNA clone hk43d03, mRNA sequence.    42  1e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_4(AC116956|pid:none) Dictyostelium discoideum chromosom...   340   3e-92
(Q2TA24) RecName: Full=V-type proton ATPase 21 kDa proteolipid s...   169   7e-41
AY892285_1(AY892285|pid:none) Synthetic construct Homo sapiens c...   169   7e-41
DQ347602_1(DQ347602|pid:none) Bos taurus clone H37 ATP6V0B mRNA,...   169   7e-41
EF146183_1(EF146183|pid:none) Populus trichocarpa clone WS0116_A...   169   9e-41
DQ217212_1(DQ217212|pid:none) Taeniopygia guttata clone 0058P003...   168   1e-40
(Q91V37) RecName: Full=V-type proton ATPase 21 kDa proteolipid s...   167   2e-40
BC030393_1(BC030393|pid:none) Mus musculus ATPase, H+ transporti...   167   2e-40
BC091622_1(BC091622|pid:none) Xenopus tropicalis ATPase, H+ tran...   166   7e-40
EF214934_1(EF214934|pid:none) Callithrix jacchus clone I13-50.1_...   164   2e-39

 psg: 0.80  gvh: 0.76  alm: 0.19  top: 0.80  tms: 0.27  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSA536 is end

>SSA536Z.Seq
----------AAAAATGCCTGATATTAATCCACTTACTCCAATTCCAGATAATAACTATT
ATGATCAAGGTACTTATTTCCTTGTAACTATATCCCCATCAACATGGGCTGCACTTGGTA
TTGGCCTTTCATTAGCCTTATCAGTTGTTGGTTCAGCTTGGGGTATTTGGGTCACTGCAT
CATCACTTATGGGTGCTGCCGTTAAAGAACCAAGAATTCGTTCGGAAAATATTATTAGTA
TTATTTTCTGTGAAGCTGTAGCTATTTATGGTATTATTTTAGCTATTATTTTAAATGGTA
AAATCGATAAATTNTTAAATATTTGGGATCCAGCTTCCGATTATATGGCCGGTTACATGA
TGTTTGGTGCCGGTATCACTGTTGGTCTTTGTAATGTTTTTTCAGGTGTTTGCGTAGGTA
TTGCTGGTAGTGGTTGTGCATTGGGTGACGCTCAAAATCCATCACTTTTTGTTAAAATGC
TTATTATTGAAATTTTCGCTGGTGCCTTAGGTCTTTACGCTGTTATTGTCGGTATTCTTA
TGACAACTAACGCTCTTGGTGTCACACAACAACCTGCACTCAAACCATAAAGATAAATTT
AAATTAATAAATAAAAAAAAATAAAATAAAATAAAATAAAAAAAATAAAATAAAAAAAAA
TAA