>SSA535 (SSA535Q) /CSM/SS/SSA5-B/SSA535Q.Seq.d/
XXXXXXXXXXCAAAATACTATGGACTGGTAAATATCGTTTGGTCGCAAGTGTTCGTGTCA
CTAAATGTCACGATGCCGCCTACAATGCCGTATACCAAACCGAGGATAATAAAGGTAACA
AAGGTGTTAGATTGGCAACAGGTAGGGATTTAATGACTGTGGTTGGTGATTGTATGAAAA
CTAATTTCACTATCTTGGGTCCAATGGTTTTACCATGGAGTGAACAAATCAAATTTTTCG
TAAACTTTTGTCATAGAAAATTGGTTGGTGGTAAAAAAGTACCTGCATACGTACCAAACT
TTAAAAAAGCTTTCCAACATTTTTGTATTCATGCTGGTGGTCGTGCCGTCATTGACGGTC
TCGAAGAGAACTTTAATCTCTCTCCATATGATGTTGAACCTTCAAGAGCTACCCTCTATC
GTTATGGTAACACCTCTTCTTCCTCAATTTGGTATGAATTAAACTTTATCGAAAAGCAAC
ATTCAGTTAAATGTGGTGAAAAAGTTTTACAATTAAGTTTTGGTAGTGGTTTCAAAATGA
AGTCTTTAGTTTGGCAATCAATTAGAGATATTGGTCCATCAAAAAAAAAAGAAATTAAAT
NNNNNNATAAAATAAATAAATAAATTAAATAAATAATAAATAAAAAAATAGTTATTTATA
AATTTTAAAAAAAAAAAA

---KILWTGKYRLVASVRVTKCHDAAYNAVYQTEDNKGNKGVRLATGRDLMTVVGDCMKT
NFTILGPMVLPWSEQIKFFVNFCHRKLVGGKKVPAYVPNFKKAFQHFCIHAGGRAVIDGL
EENFNLSPYDVEPSRATLYRYGNTSSSSIWYELNFIEKQHSVKCGEKVLQLSFGSGFKMK
SLVWQSIRDIGPSKKKEIKXXXKINK*ik*iinkkiviykf*kkk

Frame A:
---KILWTGKYRLVASVRVTKCHDAAYNAVYQTEDNKGNKGVRLATGRDLMTVVGDCMKT
NFTILGPMVLPWSEQIKFFVNFCHRKLVGGKKVPAYVPNFKKAFQHFCIHAGGRAVIDGL
EENFNLSPYDVEPSRATLYRYGNTSSSSIWYELNFIEKQHSVKCGEKVLQLSFGSGFKMK
SLVWQSIRDIGPSKKKEIKXXXKINK*ik*iinkkiviykf*kkk


Frame B:
---kyyglvnivwsqvfvslnvtmpptmpytkpriikvtkvldwqqvgi**lwlviv*kl
islswvqwfyhgvnksnfs*tfvienwlvvkkylhtyqtlkklsnifvfmlvvvpsltvs
krtlislhmmlnlqelpsivmvtpllpqfgmn*tlsksniqlnvvkkfyn*vlvvvsk*s
l*fgnqleilvhqkkkklnxxik*inklnk**ikk*lfinfkkkk


Frame C:
---ntmdw*isfgrkcsch*msrcrlqcripnrg**r*qrc*ignr*gfndcgw*lyen*
fhylgsngftme*tnqifrklls*kigww*kstcirtkl*ksfptflyscwwscrh*rsr
rel*slsi*c*tfksyplslw*hlfflnlv*iklyrkatfs*mw*ksftikfw*wfqnev
fslain*rywsikkkrn*xxx*nk*in*innk*knsyl*ilkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA535 (SSA535Q) /CSM/SS/SSA5-B/SSA535Q.Seq.d/                       1130   0.0
AFE867 (AFE867Q) /CSM/AF/AFE8-C/AFE867Q.Seq.d/                       1033   0.0
AFI293 (AFI293Q) /CSM/AF/AFI2-D/AFI293Q.Seq.d/                        809   0.0
CHM211 (CHM211Q) /CSM/CH/CHM2-A/CHM211Q.Seq.d/                         36   0.67
AHD184 (AHD184Q) /CSM/AH/AHD1-D/AHD184Q.Seq.d/                         36   0.67
VSJ234 (VSJ234Q) /CSM/VS/VSJ2-B/VSJ234Q.Seq.d/                         34   2.6
VSJ176 (VSJ176Q) /CSM/VS/VSJ1-D/VSJ176Q.Seq.d/                         34   2.6
VSI705 (VSI705Q) /CSM/VS/VSI7-A/VSI705Q.Seq.d/                         34   2.6
VSI675 (VSI675Q) /CSM/VS/VSI6-D/VSI675Q.Seq.d/                         34   2.6
VSI670 (VSI670Q) /CSM/VS/VSI6-C/VSI670Q.Seq.d/                         34   2.6

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC135604|AC135604.9 Medicago truncatula clone mth2-32p10, WORKING DRAFT SEQUENCE, 4 ordered pieces.    56  0.006  4
AC134242|AC134242.12 Medicago truncatula clone mth2-10p20, WORKING DRAFT SEQUENCE, 2 ordered pieces.    48  0.015  4
AZ531845|AZ531845.1 ENTCF72TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.18  2
BH156735|BH156735.1 ENTRU30TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.18  2
CB090762|CB090762.1 gy80b03.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone gy80b03, mRNA sequence.    46  0.55  1
X52495|X52495.1 Soybean RPB1-C gene for largest subunit of RNA polymerase II.    44  2.2  1
AW617320|AW617320.1 EST323731 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT22J19 5', mRNA sequence.    44  2.2  1
BE339651|BE339651.1 EST343708 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA7N10 similar to putative beta-ketoacyl-CoA synthase {Arabidopsis thaliana}, mRNA sequence.    44  2.2  1
AZ548781|AZ548781.1 ENTDD28TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  2.4  2
AZ543795|AZ543795.1 ENTEY78TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  2.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392440_1(AY392440|pid:none) Dictyostelium discoideum probable ...   398   e-110
(Q5XEP9) RecName: Full=3-ketoacyl-CoA synthase 17;          Shor...   209   6e-53
AC150443_9(AC150443|pid:none) Medicago truncatula chromosome 7 c...   208   1e-52
AY074518_1(AY074518|pid:none) Arabidopsis thaliana putative beta...   206   4e-52
AF247134_1(AF247134|pid:none) Limnanthes douglasii fatty acid el...   200   3e-50
(Q9LN49) RecName: Full=3-ketoacyl-CoA synthase 4;          Short...   200   3e-50
EF148325_1(EF148325|pid:none) Populus trichocarpa x Populus delt...   200   4e-50
FB808731_1(FB808731|pid:none) Sequence 28004 from Patent WO20080...   199   5e-50
AX155071_1(AX155071|pid:none) Sequence 117 from Patent WO0138484.     199   8e-50
AM440408_1(AM440408|pid:none) Vitis vinifera contig VV78X105456....   198   1e-49

 psg: 0.77  gvh: 0.34  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.04
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSA535 is cyt

>SSA535Z.Seq
----------CAAAATACTATGGACTGGTAAATATCGTTTGGTCGCAAGTGTTCGTGTCA
CTAAATGTCACGATGCCGCCTACAATGCCGTATACCAAACCGAGGATAATAAAGGTAACA
AAGGTGTTAGATTGGCAACAGGTAGGGATTTAATGACTGTGGTTGGTGATTGTATGAAAA
CTAATTTCACTATCTTGGGTCCAATGGTTTTACCATGGAGTGAACAAATCAAATTTTTCG
TAAACTTTTGTCATAGAAAATTGGTTGGTGGTAAAAAAGTACCTGCATACGTACCAAACT
TTAAAAAAGCTTTCCAACATTTTTGTATTCATGCTGGTGGTCGTGCCGTCATTGACGGTC
TCGAAGAGAACTTTAATCTCTCTCCATATGATGTTGAACCTTCAAGAGCTACCCTCTATC
GTTATGGTAACACCTCTTCTTCCTCAATTTGGTATGAATTAAACTTTATCGAAAAGCAAC
ATTCAGTTAAATGTGGTGAAAAAGTTTTACAATTAAGTTTTGGTAGTGGTTTCAAAATGA
AGTCTTTAGTTTGGCAATCAATTAGAGATATTGGTCCATCAAAAAAAAAAGAAATTAAAT
NNNNNNATAAAATAAATAAATAAATTAAATAAATAATAAATAAAAAAATAGTTATTTATA
AATTTTAAAAAAAAAAAA