>SSA534 (SSA534Q) /CSM/SS/SSA5-B/SSA534Q.Seq.d/
XXXXXXXXXXAAAATCAAGGTCAATGTGGTAGTTGTTGGTCCATTTTCAACTACTGGTAA
TGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTT
GGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTG
TAATGGTGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAAC
AGAATCTTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAA
TATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGG
GTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTA
TATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAAT
TGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAA
GAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAA
TACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATNCNAAATATTT
AGTTTAGAAAAAAAAAAAAAAAAA

---IKVNVVVVGPFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCN
GGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGY
IVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKN
SWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iyxkylv*kkkkk

Frame A:
---ksrsmw*llvhfqllvmlrdnislvrin*fhyqsktw*ivimsvwnmkvnklvmrvv
mvvfnqmhiiislkmvefkqnlhiltllkqvhnvtltlpilvqrfpilq*sqrmkl*wlg
tslvldhsqlllmllsgnfilvvylifhviqihlimvf*llvtllkiqfsvkichigl*r
ilgvqigenkdtfi*eeerihvvyqtlfqlv*fkfxxni*frkkkkk


Frame B:
---nqgqcgscwsifnyw*c*gttfh*se*isfiiraklgrl*s*vygi*r*tsl**gl*
wwsstkci*lyh*kwwnsnrifislhc*nrytm*l*lcqywckdfqfyndpke*ncngwv
hr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwllc*kynfp*kyaildcke
flgcrlgrtrihlfkkrkeymwciklcfn*ynlnlxxifslekkkkk


Frame C:
---IKVNVVVVGPFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCN
GGLQPNAYNYIIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGY
IVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKN
SWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iyxkylv*kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA534 (SSA534Q) /CSM/SS/SSA5-B/SSA534Q.Seq.d/                       1291   0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                       1275   0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/                       1261   0.0
AFE263 (AFE263Q) /CSM/AF/AFE2-C/AFE263Q.Seq.d/                       1259   0.0
AHL332 (AHL332Q) /CSM/AH/AHL3-B/AHL332Q.Seq.d/                       1255   0.0
SFA691 (SFA691Q) /CSM/SF/SFA6-D/SFA691Q.Seq.d/                       1245   0.0
CFF469 (CFF469Q) /CSM/CF/CFF4-C/CFF469Q.Seq.d/                       1235   0.0
VFF582 (VFF582Q) /CSM/VF/VFF5-D/VFF582Q.Seq.d/                       1229   0.0
SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                       1229   0.0
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                       1213   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.    1221  0.0  2
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                  204  1e-50  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   204  1e-50  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   204  1e-50  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                   204  1e-50  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   204  1e-50  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   204  1e-50  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   204  1e-50  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   204  2e-50  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                     204  2e-50  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   421   e-119
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   227   1e-59
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   216   6e-56
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...   215   1e-55
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   207   4e-54
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   206   7e-54
AC149637_11(AC149637|pid:none) Medicago truncatula clone mth2-18...   206   9e-54
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot...   205   1e-53
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20...   206   2e-53
AB270920_1(AB270920|pid:none) Phaseolus vulgaris CP2 gene for cy...   205   7e-53

 psg: 0.92  gvh: 0.43  alm: 0.38  top: 0.43  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA534 is cyt

>SSA534Z.Seq
----------AAAATCAAGGTCAATGTGGTAGTTGTTGGTCCATTTTCAACTACTGGTAA
TGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGTTTCATTATCAGAGCAAAACTT
GGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGAACAAGCTTGTGATGAGGGTTG
TAATGGTGGTCTTCAACCAAATGCATATAATTATATCATTAAAAATGGTGGAATTCAAAC
AGAATCTTCATATCCTTACACTGCTGAAACAGGTACACAATGTAACTTTAACTCTGCCAA
TATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGG
GTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTA
TATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAAT
TGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAA
GAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAA
TACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATNCNAAATATTT
AGTTTAGAAAAAAAAAAAAAAAAA