>SSA531 (SSA531Q) /CSM/SS/SSA5-B/SSA531Q.Seq.d/
XXXXXXXXXXTTATATGAAGATTGGAAAACTGTTAATCAAAAAACAATGAATTATTTAAG
AAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTGTCTTGGTCA
AGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATCAACAACAAC
AACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGGATCAGGTTC
ATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAACCACTGGTGG
ATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTATTAGACAAAC
TTGGTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTAACCAATCCATCAAG
TAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATCTTGGGAATT
GAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAATTAGTCCTGG
TCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATTTACTCAAAT
TTAAAAA

---YEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTT
TTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTW
FDGTNTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQISPGQ
TLSFGYIVSSSTVITFTQI*k

Frame A:
---ymkigkllikkq*ii*eklilhlqnslqmvikfvlvkfqqfqqlvvqlqllhnqqqq
qqleqvqqlvnqqplvdqvhqqlqlnhqqqqqqqqqplvdqvqldhqmlkqllnklldkl
glmvqiqilwlivh*pihqvvqflfqdlqliklhhhlgn*i*lvqilfhlqvgitklvlv
klyhlvilflvvl*lhllkfk


Frame B:
---i*rlenc*sknnelfkkn*fftfkihskw*snlswssfnnfnnw*fnyncftinnnn
nnwnrfnn**tnnhwwirfinnyn*tinnnnnnnnnhwwikynwiikc*ssy*tny*tnl
v*wykykyfg*lyinqsik*snsyskicn**nsiiilgiefs*fkycfiykle*pn*sws
nfiiwlycf**ycnyiysnlk


Frame C:
---YEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTT
TTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTW
FDGTNTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQISPGQ
TLSFGYIVSSSTVITFTQI*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        626   e-179
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        626   e-179
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        626   e-179
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        626   e-179
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        626   e-179
SSG191 (SSG191Q) /CSM/SS/SSG1-D/SSG191Q.Seq.d/                        626   e-179
SSF613 (SSF613Q) /CSM/SS/SSF6-A/SSF613Q.Seq.d/                        626   e-179
SSE591 (SSE591Q) /CSM/SS/SSE5-D/SSE591Q.Seq.d/                        626   e-179
SSD759 (SSD759Q) /CSM/SS/SSD7-C/SSD759Q.Seq.d/                        626   e-179
SSB340 (SSB340Q) /CSM/SS/SSB3-B/SSB340Q.Seq.d/                        626   e-179

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC090051|AC090051.8 Homo sapiens 12q BAC RP11-467E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    54  0.016  3
M18162|M18162.1 Pea PSL3 lectin pseudogene.                       44  0.032  2
BU367499|BU367499.1 603784480F1 CSEQCHN72 Gallus gallus cDNA clone ChEST738o19 5', mRNA sequence.    48  0.12  1
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.34  4
AF102955|AF102955.1 Pelvetia canaliculata country Isle of Man 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.    46  0.49  1
AF102953|AF102953.1 Pelvetia canaliculata country Norway 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.49  1
AF102954|AF102954.1 Pelvetia canaliculata country Portugal 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.49  1
U39645|U39645.1 Caenorhabditis elegans cosmid C14F11.    40  1.2  2
AC087369|AC087369.5 Homo sapiens chromosome 8, clone RP11-728L1, complete sequence.    32  1.5  6
AX573242|AX573242.1 Sequence 88 from Patent WO02074992.           38  1.6  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    50   5e-05
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    43   0.006
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    41   0.029
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   0.19
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ...    38   0.19
AB110082_1(AB110082|pid:none) Bacillus ehimensis gene for chitin...    38   0.25
CP000934_3210(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.42
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    37   0.55
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel...    36   0.72
CP000282_2307(CP000282|pid:none) Saccharophagus degradans 2-40, ...    36   0.72

 psg: 0.59  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSA531 is cyt

>SSA531Z.Seq
----------TTATATGAAGATTGGAAAACTGTTAATCAAAAAACAATGAATTATTTAAG
AAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTGTCTTGGTCA
AGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATCAACAACAAC
AACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGGATCAGGTTC
ATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAACCACTGGTGG
ATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTATTAGACAAAC
TTGGTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTAACCAATCCATCAAG
TAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATCTTGGGAATT
GAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAATTAGTCCTGG
TCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATTTACTCAAAT
TTAAAAA