>SSA524 (SSA524Q) /CSM/SS/SSA5-A/SSA524Q.Seq.d/
XXXXXXXXXXAGGTGAACAGGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATG
CATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTG
CTGAAACAGGTCCACAATGTAACTTTCACTCTGCCAATATTGGTGCAAAGATTTCCAATT
TTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCAC
TCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTC
CATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATA
CAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGG
GAGAACAAGGATACATTTATTTAAGAAGAGGAAATAATACATGTGGNNNNNNAAACTTTG
TTTCAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAATAAAA
A

---GEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGPQCNFHSANIGAKISNF
TMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNT
IFRKNMPYWIVKNSWGADWGEQGYIYLRRGNNTCGXXNFVSTSII*iytkylv*kkknk

Frame A:
---GEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAETGPQCNFHSANIGAKISNF
TMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNT
IFRKNMPYWIVKNSWGADWGEQGYIYLRRGNNTCGXXNFVSTSII*iytkylv*kkknk


Frame B:
---vnrlvmrvvmvvfnqmhiiislkmvefkqnlhiltllkqvhnvtftlpilvqrfpil
q*sqrmkl*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llvtllkiq
fsvkichigl*rilgvqigenkdtfi*eeeiihvxxxtlfqlv*fkfipni*frkkkik


Frame C:
---*tgl**gl*wwsstkci*lyh*kwwnsnrifislhc*nrstm*lslcqywckdfqfy
ndpke*ncngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwllc*kyn
fp*kyaildckeflgcrlgrtrihlfkkrk*ymwxxklcfn*ynlnlyqifslekkk*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA524 (SSA524Q) /CSM/SS/SSA5-A/SSA524Q.Seq.d/                        983   0.0
SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                        952   0.0
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/                        952   0.0
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/                        952   0.0
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                        952   0.0
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/                        952   0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                        952   0.0
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/                        952   0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/                        952   0.0
SSE172 (SSE172Q) /CSM/SS/SSE1-C/SSE172Q.Seq.d/                        952   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.     864  0.0  2
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                  103  5e-41  3
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   103  5e-41  3
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   103  5e-41  3
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                   103  5e-41  3
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   103  5e-41  3
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   103  5e-41  3
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   103  5e-41  3
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   103  7e-41  3
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                     103  7e-41  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   335   6e-91
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   173   3e-42
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...   173   3e-42
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   165   8e-40
AB267820_1(AB267820|pid:none) Ipomoea nil In15 mRNA for cysteine...   160   2e-38
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)...   160   2e-38
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183...   160   2e-38
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   159   3e-38
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20...   157   1e-37
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   156   4e-37

 psg: 0.75  gvh: 0.25  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSA524 is nuc

>SSA524Z.Seq
----------AGGTGAACAGGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATG
CATATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTG
CTGAAACAGGTCCACAATGTAACTTTCACTCTGCCAATATTGGTGCAAAGATTTCCAATT
TTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCAC
TCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTC
CATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATA
CAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGG
GAGAACAAGGATACATTTATTTAAGAAGAGGAAATAATACATGTGGNNNNNNAAACTTTG
TTTCAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAATAAAA
A