>SSA520 (SSA520Q) /CSM/SS/SSA5-A/SSA520Q.Seq.d/
XXXXXXXXXXCCAGAGAGAATTGCTGATTTGCTTTTCCGTGATGATACTGATAAAAATGG
TGAATTAACAATTGAAGAGGCCAAACTTAGAATTGTTAGAATGAACGATGAGAAAATTGA
AAAAGTTTTAAATTGGGATGTTGAAAAATTTATTAATGATAATGATAAAGATGGTGATAG
AAAAATTACCAGAGATGAAGTTCTTCAAAGATTCACTGAACAAGGTGCTGAGGATCCAGA
ACTTATTACTGATAGTATCTTCAGACAAATGGATCTTGACCGTGATGGTGTAATCACCTG
TGATGAAATCAAAGAATTCAACAGAAAGAAGAAATTCAGTTTCCTTAAATCATCAGCACC
AAAACAATAAAAAAGAAACATTACAAATTCACCCCTTTTTGAAATGTTTTTCTGTTTTTA
AATCAGATAATAATAAAATTAAATGTATTCATTTATTTTTTAAATAAAAAAAAAAAAAAA
AAA

---ERIADLLFRDDTDKNGELTIEEAKLRIVRMNDEKIEKVLNWDVEKFINDNDKDGDRK
ITRDEVLQRFTEQGAEDPELITDSIFRQMDLDRDGVITCDEIKEFNRKKKFSFLKSSAPK
Q*krnitnsplfemffcf*ir***n*mysfif*ikkkkk

Frame A:
---qrellicfsvmilikmvn*qlkrpnlelle*tmrklkkf*igmlknllmimikmvie
klpemkffkdslnkvlriqnlllivssdkwiltvmv*spvmksknsterrnsvslnhqhq
nnkketlqihpflkcfsvfksdnnkikcihlffk*kkkkk


Frame B:
---renc*fafp**y**kw*inn*rgqt*nc*ner*en*ksfklgc*kiy*****rw**k
nyqr*ssskih*trc*gsrtyy**ylqtngs*p*wcnhl**nqriqqkeeiqfp*iistk
tikkkhykftpf*nvflflnqiiiklnvfiyflnkkkkkk


Frame C:
---ERIADLLFRDDTDKNGELTIEEAKLRIVRMNDEKIEKVLNWDVEKFINDNDKDGDRK
ITRDEVLQRFTEQGAEDPELITDSIFRQMDLDRDGVITCDEIKEFNRKKKFSFLKSSAPK
Q*krnitnsplfemffcf*ir***n*mysfif*ikkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE834 (VSE834Q) /CSM/VS/VSE8-B/VSE834Q.Seq.d/                        902   0.0
VSD646 (VSD646Q) /CSM/VS/VSD6-B/VSD646Q.Seq.d/                        902   0.0
VSC829 (VSC829Q) /CSM/VS/VSC8-B/VSC829Q.Seq.d/                        902   0.0
SSM118 (SSM118Q) /CSM/SS/SSM1-A/SSM118Q.Seq.d/                        902   0.0
SSI676 (SSI676Q) /CSM/SS/SSI6-D/SSI676Q.Seq.d/                        902   0.0
SSH426 (SSH426Q) /CSM/SS/SSH4-B/SSH426Q.Seq.d/                        902   0.0
SSE554 (SSE554Q) /CSM/SS/SSE5-C/SSE554Q.Seq.d/                        902   0.0
SSC165 (SSC165Q) /CSM/SS/SSC1-C/SSC165Q.Seq.d/                        902   0.0
SSA520 (SSA520Q) /CSM/SS/SSA5-A/SSA520Q.Seq.d/                        902   0.0
CHE592 (CHE592Q) /CSM/CH/CHE5-D/CHE592Q.Seq.d/                        900   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U55379|U55379.1 Dictyostelium discoideum calcium-binding protein CBP2 gene, complete cds.   551  0.0  3
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    34  0.002  13
BZ079335|BZ079335.1 llg32b08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44  0.006  2
BM883483|BM883483.1 rc07d03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5', mRNA sequence.    42  0.006  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.011  9
AC104156|AC104156.2 Pan troglodytes clone RP43-134H9, WORKING DRAFT SEQUENCE, 3 ordered pieces.    36  0.020  7
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  0.030  9
AL031746|AL031746.9 Plasmodium falciparum DNA from MAL1P3.        38  0.037  8
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36  0.045  11
AJ294725|AJ294725.1 Astasia longa complete chloroplast genome.    40  0.050  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...   240   1e-62
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    57   2e-07
(Q966R0) RecName: Full=Calcium-binding protein I; AltName: Full=...    52   5e-06
(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=...    51   1e-05
(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=...    49   4e-05
BX908809_36(BX908809|pid:none) Neurospora crassa DNA linkage gro...    49   8e-05
AB061864_1(AB061864|pid:none) Magnaporthe grisea MgNCS1 mRNA for...    48   1e-04
BC121367_1(BC121367|pid:none) Xenopus tropicalis hippocalcin-lik...    48   1e-04
CU638743_173(CU638743|pid:none) Podospora anserina genomic DNA c...    47   2e-04
AE017347_220(AE017347|pid:none) Cryptococcus neoformans var. neo...    47   2e-04

 psg: 0.75  gvh: 0.14  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSA520 is nuc

>SSA520Z.Seq
----------CCAGAGAGAATTGCTGATTTGCTTTTCCGTGATGATACTGATAAAAATGG
TGAATTAACAATTGAAGAGGCCAAACTTAGAATTGTTAGAATGAACGATGAGAAAATTGA
AAAAGTTTTAAATTGGGATGTTGAAAAATTTATTAATGATAATGATAAAGATGGTGATAG
AAAAATTACCAGAGATGAAGTTCTTCAAAGATTCACTGAACAAGGTGCTGAGGATCCAGA
ACTTATTACTGATAGTATCTTCAGACAAATGGATCTTGACCGTGATGGTGTAATCACCTG
TGATGAAATCAAAGAATTCAACAGAAAGAAGAAATTCAGTTTCCTTAAATCATCAGCACC
AAAACAATAAAAAAGAAACATTACAAATTCACCCCTTTTTGAAATGTTTTTCTGTTTTTA
AATCAGATAATAATAAAATTAAATGTATTCATTTATTTTTTAAATAAAAAAAAAAAAAAA
AAA