>SSA516 (SSA516Q) /CSM/SS/SSA5-A/SSA516Q.Seq.d/
GTTTTAGGTGCTGTTTTATCATCATATGTTCCAATTTTAGGTTGGAGTTCAAAGGATAAT
GTATTCCCAAGCAATTCAGTAAACAAATATACTCAAGAACACTTTAAAACACTTATTCAA
TCAATCATTAATGAAAACAGCGTTGAAACTCTTACAATTTTTGTAGAACCAAAACTTCGT
TCAGATCAACTCTCAACCGTTTTTGATTCATATTCATCAAATAGTAATGGTGGTTTATTT
AAAAATTTAAAGAATTCAGTTGAAGAATCAAAATCACACATTTTCGTTCCATCATCAGAA
GTTGGAGTTTTAAATATTGTATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCC
AAAGAATCTGACACCCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCC
TCAAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCT
CAAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTT
TCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAA
GTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGT
AGTGGATCAAGTAGTTCAGGXXXXXXXXXX

VLGAVLSSYVPILGWSSKDNVFPSNSVNKYTQEHFKTLIQSIINENSVETLTIFVEPKLR
SDQLSTVFDSYSSNSNGGLFKNLKNSVEESKSHIFVPSSEVGVLNIVSQLKGIKGSVFVA
KESDTQFEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFV
SFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSS---

Frame A:
VLGAVLSSYVPILGWSSKDNVFPSNSVNKYTQEHFKTLIQSIINENSVETLTIFVEPKLR
SDQLSTVFDSYSSNSNGGLFKNLKNSVEESKSHIFVPSSEVGVLNIVSQLKGIKGSVFVA
KESDTQFEIEGAQNILLSEASKIQPTLSNKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFV
SFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSS---


Frame B:
f*vlfyhhmfqf*vgvqrimysqaiq*tnilkntlkhlfnqslmktalkllqfl*nqnfv
qinsqpflihihqivmvvylki*riqlknqnhtfsfhhqklef*ilyhn*kvskdqfllp
knltpnlklkvpkifyyqkpqkfnqpyqtkllis*lfyslkiktqpsnnsnlllknhhsf
lsllllllmnlmfkllstnklnnhfykmvhhh*iqpankvvdqvvq---


Frame C:
frccfiiicsnfrlefkg*cipkqfskqiysrtl*ntysinh**kqr*nsynfcrtktsf
rstlnrf*fifik**wwfi*kfkefs*rikithfrsiirswsfkycitikryqrisfccq
ri*hpi*n*rcpkyfiirslknstnlikqsc*yrscftrsksrlnhqtipicc*kiiirf
flyccfcs*i*cssyfqqts*tiiftrwfiiikfsqptr*wik*f---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFC149 (VFC149Q) /CSM/VF/VFC1-C/VFC149Q.Seq.d/                       1348   0.0
SSA516 (SSA516Q) /CSM/SS/SSA5-A/SSA516Q.Seq.d/                       1348   0.0
VSI650 (VSI650Q) /CSM/VS/VSI6-C/VSI650Q.Seq.d/                       1334   0.0
VFJ889 (VFJ889Q) /CSM/VF/VFJ8-D/VFJ889Q.Seq.d/                       1324   0.0
SSK627 (SSK627Q) /CSM/SS/SSK6-B/SSK627Q.Seq.d/                       1302   0.0
VFA510 (VFA510Q) /CSM/VF/VFA5-A/VFA510Q.Seq.d/                       1277   0.0
VHH512 (VHH512Q) /CSM/VH/VHH5-A/VHH512Q.Seq.d/                       1219   0.0
SSM805 (SSM805Q) /CSM/SS/SSM8-A/SSM805Q.Seq.d/                       1199   0.0
VFC637 (VFC637Q) /CSM/VF/VFC6-B/VFC637Q.Seq.d/                       1082   0.0
SSE549 (SSE549Q) /CSM/SS/SSE5-C/SSE549Q.Seq.d/                       1009   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   664  0.0  5
AL162379|AL162379.14 Human DNA sequence from clone RP11-426K7 on chromosome 13.    38  0.17  3
AQ553866|AQ553866.1 RPCI-11-417D10.TV RPCI-11 Homo sapiens genomic clone RPCI-11-417D10, genomic survey sequence.    40  0.25  2
AL589745|AL589745.8 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-478K15.    38  0.35  3
AQ516440|AQ516440.1 HS_5070_B2_C01_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=646 Col=2 Row=F, genomic survey sequence.    40  0.37  2
AZ518161|AZ518161.1 RPCI-11-252F12.TV RPCI-11 Homo sapiens genomic clone RPCI-11-252F12 , DNA sequence.    40  0.40  2
AC128926|AC128926.3 Rattus norvegicus clone CH230-357J9, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.49  5
AP001489|AP001489.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-715J4, WORKING DRAFT SEQUENCE, 12 unordered pieces.    34  0.83  6
AC126816|AC126816.5 Rattus norvegicus clone CH230-3P20, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46  0.92  4
AC122150|AC122150.2 Danio rerio clone CH211-39D21 strain Tue, WORKING DRAFT SEQUENCE, 10 ordered pieces.    38  1.1  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   351   1e-95
CP000102_1106(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    38   0.33
BC167704_1(BC167704|pid:none) Xenopus tropicalis hypothetical pr...    36   1.2
(Q555U5) RecName: Full=Probable inactive serine/threonine-protei...    34   4.7
(P17120) RecName: Full=Kinesin-like protein bimC;  &A34795(A3479...    33   6.1
AL445565_247(AL445565|pid:none) Mycoplasma pulmonis (strain UAB ...    33   6.1
CP001146_1665(CP001146|pid:none) Dictyoglomus thermophilum H-6-1...    33   6.1
CP000780_354(CP000780|pid:none) Candidatus Methanoregula boonei ...    33   8.0
CR382138_339(CR382138|pid:none) Debaryomyces hansenii strain CBS...    33   8.0
(P58884) RecName: Full=Dihydroorotate dehydrogenase electron tra...    33   8.0

 psg: 0.91  gvh: 0.52  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA516 is cyt

>SSA516F.Seq
GTTTTAGGTGCTGTTTTATCATCATATGTTCCAATTTTAGGTTGGAGTTCAAAGGATAAT
GTATTCCCAAGCAATTCAGTAAACAAATATACTCAAGAACACTTTAAAACACTTATTCAA
TCAATCATTAATGAAAACAGCGTTGAAACTCTTACAATTTTTGTAGAACCAAAACTTCGT
TCAGATCAACTCTCAACCGTTTTTGATTCATATTCATCAAATAGTAATGGTGGTTTATTT
AAAAATTTAAAGAATTCAGTTGAAGAATCAAAATCACACATTTTCGTTCCATCATCAGAA
GTTGGAGTTTTAAATATTGTATCACAATTAAAAGGTATCAAAGGATCAGTTTTTGTTGCC
AAAGAATCTGACACCCAATTTGAAATTGAAGGTGCCCAAAATATTTTATTATCAGAAGCC
TCAAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGTTGTTTTACTCGCT
CAAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGTT
TCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACAA
GTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGT
AGTGGATCAAGTAGTTCAGG----------