>SSA514 (SSA514Q) /CSM/SS/SSA5-A/SSA514Q.Seq.d/
GTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACA
GAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATT
CATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTA
CCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTA
TTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAA
TGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATA
ATAATTTCTAATTGTAAAAAAAXXXXXXXXXX

VLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGT
SWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknn
nf*l*k---

Frame A:
vf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgv
phgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikkikiki
iisnckk---


Frame B:
cfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgy
lmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*k*k*
*flivk---


Frame C:
VLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGT
SWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknknn
nf*l*k---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        670   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        670   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        670   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        670   0.0
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        670   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        670   0.0
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        670   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        670   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        670   0.0
SSJ658 (SSJ658Q) /CSM/SS/SSJ6-C/SSJ658Q.Seq.d/                        670   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   670  0.0  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   410  e-173  3
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   129  3e-42  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88  2e-19  3
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76  7e-17  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88  7e-15  3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82  6e-12  1
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46  8e-06  2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50  0.002  2
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    38  0.006  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   169   4e-41
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    78   8e-14
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    76   3e-13
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    76   3e-13
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...    74   1e-12
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...    74   2e-12
BT058408_1(BT058408|pid:none) Salmo salar clone Contig454 Cathep...    74   2e-12
Y14966_1(Y14966|pid:none) Penaeus vannamei gene encoding catheps...    74   2e-12
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...    74   2e-12
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...    74   2e-12

 psg: 0.49  gvh: 0.19  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSA514 is nuc

>SSA514F.Seq
GTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACA
GAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATT
CATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTA
CCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTA
TTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGAGAA
TGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAAATA
ATAATTTCTAATTGTAAAAAAA