>SSA511 (SSA511Q) /CSM/SS/SSA5-A/SSA511Q.Seq.d/
XXXXXXXXXXTTTTACGATGATGAATATTNTATTGCAATCGAAGATTTTAACCCACAAGC
ACCAGTACATTTTTTAGTTATTCCAAAACTTGCCGTTGGTGGTCTTAGTGATGTCGCCAA
TGTTGACCTTGAAAAATACAAAGAATCTATGGGTCATATCATGTCAAAAATTCATCATAT
CGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTCA
ACAATCTGTTAGATGGTTACATATTCATATCCTTGGTGGTAGACAAATGAATTGGCCACC
AGGCTAATTTCAATTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAG
TAAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCAC
TAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---YDDEYXIAIEDFNPQAPVHFLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHIA
SLKGADSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG*fqlknsslylfkpftnnsk
ensplart**knisf*witskkkkkkkkkkkkk

Frame A:
---ftmmnixlqskilthkhqyif*lfqnlplvvlvmspmltlkntknlwviscqkfiis
lllkvliltdwslmkvf*vnnlldgyifislvvdk*ighqanfn*rilhctylnllliiv
kkihhwhvhnkkiypfngslakkkkkkkkkkkkk


Frame B:
---lr**ixycnrrf*ptststffsysktcrwws**crqc*p*kiqriygsyhvknssyr
fs*rc*flqigh**rcfrstic*mvtysypww*tnelatrlisikeffivpi*tfy****
rkftigtyiikkyillmdh*qkkkkkkkkkkkkk


Frame C:
---YDDEYXIAIEDFNPQAPVHFLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHIA
SLKGADSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG*fqlknsslylfkpftnnsk
ensplart**knisf*witskkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA511 (SSA511Q) /CSM/SS/SSA5-A/SSA511Q.Seq.d/                        773   0.0
VSE744 (VSE744Q) /CSM/VS/VSE7-B/VSE744Q.Seq.d/                        757   0.0
VSB884 (VSB884Q) /CSM/VS/VSB8-D/VSB884Q.Seq.d/                        757   0.0
VSB635 (VSB635Q) /CSM/VS/VSB6-B/VSB635Q.Seq.d/                        757   0.0
SSM528 (SSM528Q) /CSM/SS/SSM5-B/SSM528Q.Seq.d/                        757   0.0
SSK684 (SSK684Q) /CSM/SS/SSK6-D/SSK684Q.Seq.d/                        757   0.0
SSK564 (SSK564Q) /CSM/SS/SSK5-C/SSK564Q.Seq.d/                        757   0.0
SSJ812 (SSJ812Q) /CSM/SS/SSJ8-A/SSJ812Q.Seq.d/                        757   0.0
SSI289 (SSI289Q) /CSM/SS/SSI2-D/SSI289Q.Seq.d/                        757   0.0
SSI106 (SSI106Q) /CSM/SS/SSI1-A/SSI106Q.Seq.d/                        757   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB029922|AB029922.1 Dictyostelium discoideum DD-1 mRNA, complete cds.   735  0.0  2
U61986|U61986.1 Dictyostelium discoideum PkiA (pkiA) mRNA, complete cds.   498  0.0  4
BH605184|BH605184.1 BOGSB09TR BOGS Brassica oleracea genomic clone BOGSB09, DNA sequence.    48  0.005  2
BH724763|BH724763.1 BOMPT20TF BO_2_3_KB Brassica oleracea genomic clone BOMPT20, DNA sequence.    48  0.095  1
BG354820|BG354820.1 MBTsMLA031T7SEQ Trichinella spiralis muscle stage larvae (BC) Trichinella spiralis cDNA clone MBTsMLA031 5', mRNA sequence.    48  0.095  1
AP003192|AP003192.2 Clostridium perfringens DNA, complete genome, section 8/10.    56  0.11  7
AF056206|AF056206.1 Plasmodium falciparum putative protein kinase C interacting protein 1 (pkci1) gene, complete cds.    44  0.12  2
BX219259|BX219259.1 Danio rerio genomic clone DKEY-47E15, genomic survey sequence.    46  0.37  1
CB344691|CB344691.2 CA48EN0002_IaR_F04 Cabernet Sauvignon Leaf-CA48EN Vitis vinifera cDNA clone CA48EN0002_IaR_F04 3', mRNA sequence.    44  1.5  1
AC107139|AC107139.5 Rattus norvegicus clone CH230-99M21, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23921) RecName: Full=Protein pkiA; AltName: Full=Protein DD-1;...   198   4e-50
U61986_1(U61986|pid:none) Dictyostelium discoideum PkiA (pkiA) m...   172   3e-42
BC068885_1(BC068885|pid:none) Xenopus laevis hypothetical protei...   100   3e-20
BC135760_1(BC135760|pid:none) Xenopus tropicalis cDNA clone IMAG...    99   4e-20
(Q8SQ21) RecName: Full=Histidine triad nucleotide-binding protei...    96   4e-19
BA000045_929(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...    95   8e-19
(Q9BX68) RecName: Full=Histidine triad nucleotide-binding protei...    94   1e-18
AF085236_1(AF085236|pid:none) Homo sapiens protein kinase C inhi...    94   1e-18
BT081765_1(BT081765|pid:none) Rana catesbeiana clone rcat-evr-53...    94   1e-18
CR847821_2(CR847821|pid:none) Zebrafish DNA sequence from clone ...    94   2e-18

 psg: 0.75  gvh: 0.43  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for SSA511 is cyt

>SSA511Z.Seq
----------TTTTACGATGATGAATATTNTATTGCAATCGAAGATTTTAACCCACAAGC
ACCAGTACATTTTTTAGTTATTCCAAAACTTGCCGTTGGTGGTCTTAGTGATGTCGCCAA
TGTTGACCTTGAAAAATACAAAGAATCTATGGGTCATATCATGTCAAAAATTCATCATAT
CGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTCA
ACAATCTGTTAGATGGTTACATATTCATATCCTTGGTGGTAGACAAATGAATTGGCCACC
AGGCTAATTTCAATTAAAGAATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAG
TAAAGAAAATTCACCATTGGCACGTACATAATAAAAAAATATATCCTTTTAATGGATCAC
TAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA