SSA506
Library SS
(Link to library)
Clone ID SSA506
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13419-1
Original site URL
Representative seq. ID SSA506F
(Link to Original site)
Representative DNA sequence
>SSA506 (SSA506Q) /CSM/SS/SSA5-A/SSA506Q.Seq.d/
CATAAATAATTATCAACATCAAATTCATACAAAAAAAAAAAAAATAAAATAAAAAAATAA
TATTTAAATAGTTAGTATATAAAAATAAAAATAAAAATAAAAATAAAAAAAAAAATAAAA
AAATAAAAATAATTTTTACCAATTGCAAAAAAAAAAAAAAAAAAAAAAATTTTCGATTGA
TCAAATCAAAACATTTTGACTAACACAAAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAACCCAAATTTTTTTTTCCAGGTTTAAAATTTCCGGCCTTTGGGCATAAATTTTAAGGG
TCCCGGTCCTTTTCTTTCCACCCCTTTTTACTGGTGGGGTTGGTAATTATTATAATTXXX
XXXXXXX
sequence update 1998. 7.21
Translated Amino Acid sequence
*iiinikfiqkkkk*nkkiifk*LVYKNKNKNKNKKKNKKIKIIFTNCKKKKKKKNFRLI
KSKHFD*hkkakkkkkkkkktqiffsrfkisglwa*ilrvpvlffpplftggvgnyyn--
-


Translated Amino Acid sequence (All Frames)
Frame A:
hk*lstsnsykkkknkikk*ylns*yikikikikikkkikk*k*flpiakkkkkkkifd*
snqniltntkkqkkkkkkkkkpkfffpglkfpafghkf*gsrsfsfhpfllvglviii--
-


Frame B:
innyqhqihtkkkkik*knni*ivsi*k*k*k*k*kkk*knknnfyqlqkkkkkkkfsid
qiktf*ltqkskkkkkkkkknpnfffqv*nfrplginfkgpgpflstpfywwgw*ll*--
-


Frame C:
*iiinikfiqkkkk*nkkiifk*LVYKNKNKNKNKKKNKKIKIIFTNCKKKKKKKNFRLI
KSKHFD*hkkakkkkkkkkktqiffsrfkisglwa*ilrvpvlffpplftggvgnyyn--
-


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA506 (SSA506Q) /CSM/SS/SSA5-A/SSA506Q.Seq.d/ 196 2e-49
SSH745 (SSH745Q) /CSM/SS/SSH7-B/SSH745Q.Seq.d/ 74 2e-12
SFH718 (SFH718Q) /CSM/SF/SFH7-A/SFH718Q.Seq.d/ 60 2e-08
VSF738 (VSF738Q) /CSM/VS/VSF7-B/VSF738Q.Seq.d/ 34 1.4
VHO449 (VHO449Q) /CSM/VH/VHO4-C/VHO449Q.Seq.d/ 34 1.4
VHC803 (VHC803Q) /CSM/VH/VHC8-A/VHC803Q.Seq.d/ 34 1.4
CHD512 (CHD512Q) /CSM/CH/CHD5-A/CHD512Q.Seq.d/ 34 1.4
VSH879 (VSH879Q) /CSM/VS/VSH8-D/VSH879Q.Seq.d/ 32 5.5
VSD343 (VSD343Q) /CSM/VS/VSD3-B/VSD343Q.Seq.d/ 32 5.5
VSC237 (VSC237Q) /CSM/VS/VSC2-B/VSC237Q.Seq.d/ 32 5.5

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 74 2e-15 5
Z99113|Z99113.1 Bacillus subtilis complete genome (section 10 of 21): from 1781201 to 2014980. 44 1.2 1
Z34883|Z34883.1 B.subtilis genes for peptide synthetase and penicillin binding protein. 44 1.2 1
AE016753|AE016753.1 Mus musculus chromosome 10 high-growth region, section 1 of 2 of the complete sequence. 44 1.2 1
AC023607|AC023607.2 Mus musculus clone CT7-308D2, WORKING DRAFT SEQUENCE, 40 unordered pieces. 44 1.2 1
AC117646|AC117646.3 Mus musculus clone RP23-243B24, WORKING DRAFT SEQUENCE, 7 ordered pieces. 44 1.2 1
AC097938|AC097938.6 Rattus norvegicus clone CH230-142H4, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 4.6 1
AC110271|AC110271.6 Mus musculus clone RP23-326P16, WORKING DRAFT SEQUENCE, 10 ordered pieces. 40 18 1
AC068555|AC068555.5 Homo sapiens chromosome 8 clone RP11-813M16, WORKING DRAFT SEQUENCE, 14 unordered pieces. 40 18 1
AC021281|AC021281.3 Homo sapiens clone RP11-21F13, WORKING DRAFT SEQUENCE, 22 unordered pieces. 40 18 1
dna update 2003. 7.17
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 312,696,165
protein update 2009. 6. 8
PSORT

psg: 0.23 gvh: -0.04 alm: 0.76 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.78 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SSA506 is nuc

5' end seq. ID SSA506F
5' end seq.
>SSA506F.Seq
CATAAATAATTATCAACATCAAATTCATACAAAAAAAAAAAAAATAAAATAAAAAAATAA
TATTTAAATAGTTAGTATATAAAAATAAAAATAAAAATAAAAATAAAAAAAAAAATAAAA
AAATAAAAATAATTTTTACCAATTGCAAAAAAAAAAAAAAAAAAAAAAATTTTCGATTGA
TCAAATCAAAACATTTTGACTAACACAAAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAACCCAAATTTTTTTTTCCAGGTTTAAAATTTCCGGCCTTTGGGCATAAATTTTAAGGG
TCCCGGTCCTTTTCTTTCCACCCCTTTTTACTGGTGGGGTTGGTAATTATTATAATT---
-------
Length of 5' end seq. 357
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -