SSA484
Library SS
(Link to library)
Clone ID SSA484
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14136-1
Original site URL
Representative seq. ID SSA484F
(Link to Original site)
Representative DNA sequence
>SSA484 (SSA484Q) /CSM/SS/SSA4-D/SSA484Q.Seq.d/
ATAATATCAAAAGCAACAATAAAATCTACATTATAAAAATGACAATATTAAAATCGATTA
CTAGTTTTACATTTAATATTAAAAATAATAATAATAATAATAAAATAAATAATATANNTA
TNAAAAATAATTTTTCAAATAATATAATATCAGAATCTTCAACATTGGTACATTTTAAAC
TATGGAGAGGTGGTACATGGCTTGATATTGCAATGGATGATAGAGTTTCCATATATACAC
TTTGTTAAATTTTTAATAATAATATTATTATATATATXXXXXXXXXX
sequence update 1998. 7.19
Translated Amino Acid sequence
NIKSNNKIYIIKMTILKSITSFTFNIKNNNNNNKINNIXXKNNFSNNIISESSTLVHFKL
WRGGTWLDIAMDDRVSIYTLC*ifnnniiiy---


Translated Amino Acid sequence (All Frames)
Frame A:
iiskatikstl*k*qy*nrllvlhlilkiiiiiik*iixxxkiifqii*yqnlqhwyiln
ygevvhglilqwmiefpyihfvkfliiillyi---


Frame B:
*yqkqq*nlhykndnikidy*fyi*y*k******nk*yxyxk*ffk*ynirifnigtf*t
merwyma*ycng**sfhiytllnf***yyyi---


Frame C:
NIKSNNKIYIIKMTILKSITSFTFNIKNNNNNNKINNIXXKNNFSNNIISESSTLVHFKL
WRGGTWLDIAMDDRVSIYTLC*ifnnniiiy---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA484 (SSA484Q) /CSM/SS/SSA4-D/SSA484Q.Seq.d/ 161 7e-39
SSA204 (SSA204Q) /CSM/SS/SSA2-A/SSA204Q.Seq.d/ 161 7e-39
CHF183 (CHF183Q) /CSM/CH/CHF1-D/CHF183Q.Seq.d/ 161 7e-39
AHN759 (AHN759Q) /CSM/AH/AHN7-C/AHN759Q.Seq.d/ 161 7e-39
SSK405 (SSK405Q) /CSM/SS/SSK4-A/SSK405Q.Seq.d/ 36 0.27
SLF294 (SLF294Q) /CSM/SL/SLF2-D/SLF294Q.Seq.d/ 36 0.27
SLA275 (SLA275Q) /CSM/SL/SLA2-D/SLA275Q.Seq.d/ 36 0.27
AFN117 (AFN117Q) /CSM/AF/AFN1-A/AFN117Q.Seq.d/ 36 0.27
SSM336 (SSM336Q) /CSM/SS/SSM3-B/SSM336Q.Seq.d/ 34 1.1
SSF241 (SSF241Q) /CSM/SS/SSF2-B/SSF241Q.Seq.d/ 34 1.1

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BW166321|BW166321.1 Ciona intestinalis cDNA, clone:rcinc011l19, 3' end, single read. 40 0.091 2
BW167121|BW167121.1 Ciona intestinalis cDNA, clone:rcinc014i14, 3' end, single read. 40 0.095 2
BV036838|BV036838.1 S212P6068FC1.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 46 0.22 1
AZ813453|AZ813453.1 2M0080C18R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0080C18 R, DNA sequence. 46 0.22 1
BH351474|BH351474.1 CH230-198O15.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-198O15, DNA sequence. 38 0.80 2
AC097716|AC097716.5 Homo sapiens chromosome 4 clone RP11-619J20, complete sequence. 44 0.88 1
BX321882|BX321882.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 44 0.88 1
AQ018254|AQ018254.1 CIT-HSP-2305E4.TR CIT-HSP Homo sapiens genomic clone 2305E4, DNA sequence. 44 0.88 1
AC016893|AC016893.4 Homo sapiens chromosome 4 clone RP11-43J7 map 4, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 0.88 1
AC131316|AC131316.3 Mus musculus clone RP23-302H1, WORKING DRAFT SEQUENCE, 6 unordered pieces. 46 1.1 2
dna update 2003. 7.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL954831_9(AL954831|pid:none) Zebrafish DNA sequence from clone ... 35 0.80
BT058958_1(BT058958|pid:none) Salmo salar clone ssal-rgf-516-040... 34 1.8
(Q6ZSI9) RecName: Full=Calpain-12; EC=3.4.22.-; &AK127... 34 1.8
AL132848_2(AL132848|pid:none) Caenorhabditis elegans YAC Y47H10A... 34 1.8
(Q9VT65) RecName: Full=Calpain-B; EC=3.4.22.-; AltName:... 33 2.3
BX649315_3(BX649315|pid:none) Zebrafish DNA sequence from clone ... 33 2.3
A55054(A55054) calpain (EC 3.4.22.17) large chain - fruit fly (D... 33 2.3
X78555_1(X78555|pid:none) D.melanogaster mRNA for calpain. 33 2.3
AF062404_1(AF062404|pid:none) Drosophila melanogaster calpain mR... 33 2.3
Z46891_1(Z46891|pid:none) D.melanogaster mRNA for Calpain. 33 2.3
protein update 2009. 6. 8
PSORT

psg: 0.83 gvh: 0.38 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.11
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
28.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for SSA484 is mit

5' end seq. ID SSA484F
5' end seq.
>SSA484F.Seq
ATAATATCAAAAGCAACAATAAAATCTACATTATAAAAATGACAATATTAAAATCGATTA
CTAGTTTTACATTTAATATTAAAAATAATAATAATAATAATAAAATAAATAATATANNTA
TNAAAAATAATTTTTCAAATAATATAATATCAGAATCTTCAACATTGGTACATTTTAAAC
TATGGAGAGGTGGTACATGGCTTGATATTGCAATGGATGATAGAGTTTCCATATATACAC
TTTGTTAAATTTTTAATAATAATATTATTATATATAT----------
Length of 5' end seq. 277
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -