>SSA477 (SSA477Q) /CSM/SS/SSA4-D/SSA477Q.Seq.d/
ATAAAAAATGGTTCAAAGACTTACCTACAGAAGAAGATTATCTTACCGTACTACTTCTAA
CGCTACCAAAATCGTCAAGACTCCAGGTGGTAGATTAGTATACCAATACATCGGTAAAAC
TGGTAAAGTTCCAAGATGTGGTGAATGTGGTGTCAACTTAGCCGGTATCCCAGCCTTAAG
ACCATACCAATACAAAAATCTTCCAAAATCAAGAAGAACTGTTTCACGTGCTTATGGTGG
TAGCAAATGTGCCAAATGTGTCCGTAACAGAATCGTTCGTGCTTTCTTAATTGAAGAACA
AAAAACCGCTAAAATTGTCTTCAAGAAGCAACAAAAAGATTTAAAACAAAAGAAAGATAA
GAAATCATCCAAATAAATGTAGTGATTAATATCAATCATTTTTTACTTATAAAAAAAAAX
XXXXXXXXX

*KMVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALR
PYQYKNLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVFKKQQKDLKQKKDK
KSSK*m**lisiifyl*kk---

Frame A:
ikngsktylqkkiilpyyf*ryqnrqdsrw*isipihr*nw*sskmw*mwcqlsrypslk
tipiqksskikkncftclww*qmcqmcp*qnrscfln*rtknr*nclqeatkrfktker*
eiiqinvvininhfllikk---


Frame B:
*KMVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALR
PYQYKNLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVFKKQQKDLKQKKDK
KSSK*m**lisiifyl*kk---


Frame C:
kkwfkdlpteedyltvllltlpkssrlqvvd*ytntsvklvkfqdvvnvvst*pvsqp*d
htntkifqnqeelfhvlmvvanvpnvsvtesfvls*lknkkplklssrsnkki*nkrkir
nhpnkcsd*yqsfftykk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA477 (SSA477Q) /CSM/SS/SSA4-D/SSA477Q.Seq.d/                        813   0.0
VSJ385 (VSJ385Q) /CSM/VS/VSJ3-D/VSJ385Q.Seq.d/                        809   0.0
VSJ330 (VSJ330Q) /CSM/VS/VSJ3-B/VSJ330Q.Seq.d/                        809   0.0
VSJ188 (VSJ188Q) /CSM/VS/VSJ1-D/VSJ188Q.Seq.d/                        809   0.0
VSI653 (VSI653Q) /CSM/VS/VSI6-C/VSI653Q.Seq.d/                        809   0.0
VSI411 (VSI411Q) /CSM/VS/VSI4-A/VSI411Q.Seq.d/                        809   0.0
VSI337 (VSI337Q) /CSM/VS/VSI3-B/VSI337Q.Seq.d/                        809   0.0
VSI288 (VSI288Q) /CSM/VS/VSI2-D/VSI288Q.Seq.d/                        809   0.0
VSH586 (VSH586Q) /CSM/VS/VSH5-D/VSH586Q.Seq.d/                        809   0.0
VSG610 (VSG610Q) /CSM/VS/VSG6-A/VSG610Q.Seq.d/                        809   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA859340|CA859340.1 EST633834 GVSP Glomus versiforme cDNA clone pGVSP4-85, mRNA sequence.    48  4e-05  2
CA859505|CA859505.1 EST633999 GVSP Glomus versiforme cDNA clone pGVSP7-22, mRNA sequence.    48  4e-05  2
CA859342|CA859342.1 EST633836 GVSP Glomus versiforme cDNA clone pGVSP4-90, mRNA sequence.    48  5e-05  2
CA859767|CA859767.1 EST634261 GVSP Glomus versiforme cDNA clone pGVSP10-70, mRNA sequence.    48  5e-05  2
AJ517522|AJ517522.1 Dreissena polymorpha EST, clone 1mof14.       56  4e-04  1
AW588153|AW588153.1 kp20a07.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:RL34_SCHPO O42846 60S RIBOSOMAL PROTEIN L34. ;, mRNA sequence.    38  5e-04  2
BE224572|BE224572.1 kp57a11.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:R34A_YEAST P87262 60S RIBOSOMAL PROTEIN L34-A. ;, mRNA sequence.    38  6e-04  2
BG225979|BG225979.1 kp44c11.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:R34A_YEAST P87262 60S RIBOSOMAL PROTEIN L34-A. ;contains Alu repetitive element;, mRNA sequence.    38  6e-04  2
BE581594|BE581594.1 kq47h04.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:R34A_YEAST P87262 60S RIBOSOMAL PROTEIN L34-A. ;, mRNA sequence.    38  6e-04  2
BE132513|BE132513.1 SWOvMfCAR06G09SK Onchocerca volvulus microfilaria cDNA (SAW98MLW-OvMf) Onchocerca volvulus cDNA clone SWOvMfCAR06G09 5', mRNA sequence.    52  0.006  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY857448_1(AY857448|pid:none) Suberites domuncula L34 mRNA, comp...   119   2e-26
CU633900_1002(CU633900|pid:none) Podospora anserina genomic DNA ...   116   3e-25
AP007159_572(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   116   3e-25
AM920433_411(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   115   5e-25
AM270139_3(AM270139|pid:none) Aspergillus niger contig An07c0220...   115   6e-25
AF378548_1(AF378548|pid:none) Ophiostoma novo-ulmi clone 10 ribo...   114   1e-24
EU810310_1(EU810310|pid:none) Gymnochlora stellata 60S ribosomal...   110   2e-23
CR382136_623(CR382136|pid:none) Debaryomyces hansenii strain CBS...   109   3e-23
CR382129_184(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   109   3e-23
CR380959_541(CR380959|pid:none) Candida glabrata strain CBS138 c...   108   6e-23

 psg: 0.64  gvh: 0.33  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.63  mip: 0.15
 nuc: 0.24  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: cytoplasmic
	 28.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SSA477 is cyt

>SSA477F.Seq
ATAAAAAATGGTTCAAAGACTTACCTACAGAAGAAGATTATCTTACCGTACTACTTCTAA
CGCTACCAAAATCGTCAAGACTCCAGGTGGTAGATTAGTATACCAATACATCGGTAAAAC
TGGTAAAGTTCCAAGATGTGGTGAATGTGGTGTCAACTTAGCCGGTATCCCAGCCTTAAG
ACCATACCAATACAAAAATCTTCCAAAATCAAGAAGAACTGTTTCACGTGCTTATGGTGG
TAGCAAATGTGCCAAATGTGTCCGTAACAGAATCGTTCGTGCTTTCTTAATTGAAGAACA
AAAAACCGCTAAAATTGTCTTCAAGAAGCAACAAAAAGATTTAAAACAAAAGAAAGATAA
GAAATCATCCAAATAAATGTAGTGATTAATATCAATCATTTTTTACTTATAAAAAAAAA