>SSA472 (SSA472Q) /CSM/SS/SSA4-C/SSA472Q.Seq.d/
TAAAAAACAAAAAAAATAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAAAAAATAAAATGAATTTTAATAAATTATTTGTAATATTATCAACAATATTCTTTTTA
GCAACAAATTATATTAAGATTGGAGAGGCATCATGTTCAGAACAATTAGCAGGTTATTTC
AATGAAAAAAATCAAAATGTTCAATTAACATTTGTTCGTCCACAAGGTGATGTAGTTTAC
ATAAGCAATACCCTATCATATTATCCCTATGGAAGTTTCTTAACAAATGGTAATTCATTT
CCAGCATTGTTTTCATCCAGGACCAAAACAACTCCATCAGGTGTGCAACCATTTGATATT
GATCAAAAACAAACATCATTCTATGATAGAAGTGGTATTATATTAAGACAAGATGGTTCA
TTATCAATGAGAGCTTTATGGTCTGGTCCATTCACTGTGAATTTAACATGTACAAATTCT
GGTTCTCTTAATTATGGTATTGCTGATAATGGTTATTTAGTATCATTACAATTTAAATAA
XXXXXXXXXX

*ktkkikk*ink*ink*ink*KNKMNFNKLFVILSTIFFLATNYIKIGEASCSEQLAGYF
NEKNQNVQLTFVRPQGDVVYISNTLSYYPYGSFLTNGNSFPALFSSRTKTTPSGVQPFDI
DQKQTSFYDRSGIILRQDGSLSMRALWSGPFTVNLTCTNSGSLNYGIADNGYLVSLQFK-
--

Frame A:
*ktkkikk*ink*ink*ink*KNKMNFNKLFVILSTIFFLATNYIKIGEASCSEQLAGYF
NEKNQNVQLTFVRPQGDVVYISNTLSYYPYGSFLTNGNSFPALFSSRTKTTPSGVQPFDI
DQKQTSFYDRSGIILRQDGSLSMRALWSGPFTVNLTCTNSGSLNYGIADNGYLVSLQFK-
--


Frame B:
kkqkk*knk*ink*ink*inkkik*ilinyl*yyqqysf*qqiilrlerhhvqnn*qvis
mkkikmfn*hlfvhkvm*ft*aipyhiipmevs*qmvihfqhcfhpgpkqlhqvcnhlil
iknkhhsmievvly*dkmvhyq*elyglvhsl*i*hvqilvllimvllimvi*yhynln-
--


Frame C:
knkknkkink*ink*ink*ikk*nef**iicniinnilfsnkly*dwrgimfrtisrlfq
*kkskcsinicsstr*cslhkqypiilslwkflnkw*fissivfiqdqnnsircati*y*
sktniil**kwyyiktrwfiinesfmvwsihcefnmykfwfs*lwyc**wlfsiiti*i-
--

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM313 (SSM313Q) /CSM/SS/SSM3-A/SSM313Q.Seq.d/                        854   0.0
SSM172 (SSM172Q) /CSM/SS/SSM1-C/SSM172Q.Seq.d/                        854   0.0
SSM155 (SSM155Q) /CSM/SS/SSM1-C/SSM155Q.Seq.d/                        854   0.0
SSL679 (SSL679Q) /CSM/SS/SSL6-D/SSL679Q.Seq.d/                        854   0.0
SSL668 (SSL668Q) /CSM/SS/SSL6-C/SSL668Q.Seq.d/                        854   0.0
SSE524 (SSE524Q) /CSM/SS/SSE5-A/SSE524Q.Seq.d/                        854   0.0
SSE342 (SSE342Q) /CSM/SS/SSE3-B/SSE342Q.Seq.d/                        854   0.0
SSC507 (SSC507Q) /CSM/SS/SSC5-A/SSC507Q.Seq.d/                        854   0.0
SSA650 (SSA650Q) /CSM/SS/SSA6-C/SSA650Q.Seq.d/                        854   0.0
SSA472 (SSA472Q) /CSM/SS/SSA4-C/SSA472Q.Seq.d/                        854   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP003131|AP003131.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 3/10.    34  1.6  6
CB989539|CB989539.1 AGENCOURT_13890362 NIH_MGC_147 Homo sapiens cDNA clone IMAGE:30341239 5', mRNA sequence.    44  1.8  1
AC084468|AC084468.1 Caenorhabditis briggsae cosmid CB044J14, complete sequence.    38  2.3  2
AL049917|AL049917.1 Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone  T5F17 (ESSAII project).    42  3.9  2
AP001790|AP001790.4 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14.    36  4.3  5
AC103324|AC103324.6 Rattus norvegicus clone CH230-116K16, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  6.9  1
AZ384947|AZ384947.1 1M0143M08F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0143M08 F, DNA sequence.    42  6.9  1
AX417039|AX417039.1 Sequence 4030 from Patent WO0228891.          42  6.9  1
CC229852|CC229852.1 CH261-46L4_Sp6.1 CH261 Gallus gallus genomic clone CH261-46L4, DNA sequence.    42  6.9  1
BE909171|BE909171.1 601501786F1 NIH_MGC_70 Homo sapiens cDNA clone IMAGE:3903524 5', mRNA sequence.    42  6.9  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83913) RecName: Full=Leupeptin-inactivating enzyme 2;         ...    36   0.75
CP000150_565(CP000150|pid:none) Burkholderia sp. 383 chromosome ...    33   4.9
CP000323_705(CP000323|pid:none) Psychrobacter cryohalolentis K5,...    33   4.9
AY084362_1(AY084362|pid:none) Arabidopsis thaliana clone 105450 ...    32   8.3
(Q9GCB9) RecName: Full=Ribosomal protein S2, mitochondrial;  &AC...    32   8.3
BA000016_852(BA000016|pid:none) Clostridium perfringens str. 13 ...    32   8.3
DQ212986_1(DQ212986|pid:none) Enterococcus faecalis VanG vancomy...    32   8.3

 psg: 0.97  gvh: 0.49  alm: 0.34  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA472 is cyt

>SSA472F.Seq
TAAAAAACAAAAAAAATAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAAAAAATAAAATGAATTTTAATAAATTATTTGTAATATTATCAACAATATTCTTTTTA
GCAACAAATTATATTAAGATTGGAGAGGCATCATGTTCAGAACAATTAGCAGGTTATTTC
AATGAAAAAAATCAAAATGTTCAATTAACATTTGTTCGTCCACAAGGTGATGTAGTTTAC
ATAAGCAATACCCTATCATATTATCCCTATGGAAGTTTCTTAACAAATGGTAATTCATTT
CCAGCATTGTTTTCATCCAGGACCAAAACAACTCCATCAGGTGTGCAACCATTTGATATT
GATCAAAAACAAACATCATTCTATGATAGAAGTGGTATTATATTAAGACAAGATGGTTCA
TTATCAATGAGAGCTTTATGGTCTGGTCCATTCACTGTGAATTTAACATGTACAAATTCT
GGTTCTCTTAATTATGGTATTGCTGATAATGGTTATTTAGTATCATTACAATTTAAATAA
----------