>SSA452 (SSA452Q) /CSM/SS/SSA4-C/SSA452Q.Seq.d/
TTTGAGTAAGAAGACAATATTCCCAGAGTTTAAATCTTTTATCATCTTGATTATTTGTTA
AAGTTAAAGTTCTTTTGGTTCCAACAATATTTTCTGGTAAATTAGAACATTGGACAGATG
TTTCAGTACCATTTTGTTTCCAATAACCAGTATTCTTTGGAAGTTTTCTTTTTCTTATTT
TATTTTCAACAAATACAAATTCAACTTTTCCACTTGAAAAATTTTCCAAGGAATCCTCTT
CCGAAACAATATTTATTAGTTCATCATTTAAATAAATGTCAAAGTATTGACTTAATCTAA
AATGACAATATACTAATAAAATATATTTAATATCATAAGATCTATAATCCAACATAATTT
ATTATTGACAGTTGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXX
XXX

fe*edniprv*ifyhldyllklkffwfqqyflvn*NIGQMFQYHFVSNNQYSLEVFFFLF
YFQQIQIQLFHLKNFPRNPLPKQYLLVHHLNKCQSIDLI*ndnilikyi*yhkiynpt*f
iids*kekkkkkkkkkk---

Frame A:
fe*edniprv*ifyhldyllklkffwfqqyflvn*NIGQMFQYHFVSNNQYSLEVFFFLF
YFQQIQIQLFHLKNFPRNPLPKQYLLVHHLNKCQSIDLI*ndnilikyi*yhkiynpt*f
iids*kekkkkkkkkkk---


Frame B:
lskktifpefksfiiliic*s*ssfgsnnifw*irtldrcfstilfpitsilwkfsfsyf
ifnkykfnfst*kifqgilfrnniy*fii*invkvlt*skmtiy**nifniirsiiqhnl
lltvekkkkkkkkkkkk---


Frame C:
*vrrqysqslnllss*lfvkvkvllvptifsgklehwtdvsvpfcfq*pvffgsflflil
fstntnstfplekfskesssetifisssfk*msky*lnlk*qytnkiylis*dl*sniiy
y*qlkrkkkkkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA452 (SSA452Q) /CSM/SS/SSA4-C/SSA452Q.Seq.d/                        383   e-105
SLD553 (SLD553Q) /CSM/SL/SLD5-C/SLD553Q.Seq.d/                         38   0.10
VHE830 (VHE830Q) /CSM/VH/VHE8-B/VHE830Q.Seq.d/                         36   0.41
VFL794 (VFL794Q) /CSM/VF/VFL7-D/VFL794Q.Seq.d/                         36   0.41
VFK317 (VFK317Q) /CSM/VF/VFK3-A/VFK317Q.Seq.d/                         36   0.41
VFG313 (VFG313Q) /CSM/VF/VFG3-A/VFG313Q.Seq.d/                         36   0.41
SSH822 (SSH822Q) /CSM/SS/SSH8-A/SSH822Q.Seq.d/                         36   0.41
SSC844 (SSC844Q) /CSM/SS/SSC8-B/SSC844Q.Seq.d/                         36   0.41
SSC365 (SSC365Q) /CSM/SS/SSC3-C/SSC365Q.Seq.d/                         36   0.41
SSA157 (SSA157Q) /CSM/SS/SSA1-C/SSA157Q.Seq.d/                         36   0.41

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          36  0.027  9
AZ667418|AZ667418.1 ENTHR47TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.069  2
CC227774|CC227774.1 CH261-156O7_RM1.1 CH261 Gallus gallus genomic clone CH261-156O7, DNA sequence.    48  0.086  1
AP004255|AP004255.1 Oryza sativa genomic DNA, chromosome 2, BAC clone:OJ1212_A08, WORKING DRAFT SEQUENCE, 1 ordered pieces.    48  0.086  1
AX345286|AX345286.1 Sequence 357 from Patent WO0200928.           48  0.12  2
AX345811|AX345811.1 Sequence 882 from Patent WO0200928.           32  0.14  5
AC125778|AC125778.5 Rattus norvegicus clone CH230-6D9, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.34  1
BH138162|BH138162.1 ENTNX14TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.34  1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          40  0.38  8
G48893|G48893.1 SHGC-77772 Human Homo sapiens STS genomic, sequence tagged site.    38  0.49  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_3(AC116984|pid:none) Dictyostelium discoideum chromosom...    77   2e-13
EU974574_1(EU974574|pid:none) Zea mays clone 453345 unknown mRNA.      35   0.79
EF420156_139(EF420156|pid:none) Tanapox virus isolate TPV-Kenya,...    35   1.0
FB782984_1(FB782984|pid:none) Sequence 2257 from Patent WO200803...    34   1.3
FB782992_1(FB782992|pid:none) Sequence 2265 from Patent WO200803...    34   1.3
CR940348_504(CR940348|pid:none) Theileria annulata strain Ankara...    34   1.8
AC006233_13(AC006233|pid:none) Arabidopsis thaliana chromosome 2...    33   2.3
FB787639_1(FB787639|pid:none) Sequence 6912 from Patent WO200803...    33   3.0
AL353865_8(AL353865|pid:none) Arabidopsis thaliana DNA chromosom...    32   5.1
CP000721_3763(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    32   5.1

 psg: 0.82  gvh: 0.51  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA452 is nuc

>SSA452F.Seq
XXXXXXXXXXTTTGAGTAAGAAGACAATATTCCCAGAGTTTAAATCTTTTATCATCTTGA
TTATTTGTTAAAGTTAAAGTTCTTTTGGTTCCAACAATATTTTCTGGTAAATTAGAACAT
TGGACAGATGTTTCAGTACCATTTTGTTTCCAATAACCAGTATTCTTTGGAAGTTTTCTT
TTTCTTATTTTATTTTCAACAAATACAAATTCAACTTTTCCACTTGAAAAATTTTCCAAG
GAATCCTCTTCCGAAACAATATTTATTAGTTCATCATTTAAATAAATGTCAAAGTATTGA
CTTAATCTAAAATGACAATATACTAATAAAATATATTTAATATCATAAGATCTATAATCC
AACATAATTTATTATTGACAGTTGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAXXXXXXXXXX