>SSA449 (SSA449Q) /CSM/SS/SSA4-C/SSA449Q.Seq.d/
TAAACTTTAAAATGAATTAATAAAATGACACTCTTAGCTTCAATCTCATCAATTGGTAAT
GTTAAATCAATTTCAAAATCAAATAATTTTTCATCATTATCAAACTCATCATTACAANCA
TCAAACTCAATACAATGTGGTGGCTGCGGTGGTAGTNCATTAATTGGTACTGTTGGTAAT
CTCGTAGGTGGTGTACTTGTCGGAACTGGTATTATTGTTGGTACTGTCGTTGGAACTGTC
AATGGTGTTGTTGGTGGTTTATTAAGTGGTCCAAACTGTGGATGCCATTAAATTTATTAA
AATCGATAATGTTNTTTTATAATAAATAAATTTGTATAAATAAAAAATGAATTTTAAAAA
AAAAAAAAAAAA

*tlk*INKMTLLASISSIGNVKSISKSNNFSSLSNSSLQXSNSIQCGGCGGSXLIGTVGN
LVGGVLVGTGIIVGTVVGTVNGVVGGLLSGPNCGCH*iy*nr*cxfiinkfv*iknef*k
kkkk

Frame A:
*tlk*INKMTLLASISSIGNVKSISKSNNFSSLSNSSLQXSNSIQCGGCGGSXLIGTVGN
LVGGVLVGTGIIVGTVVGTVNGVVGGLLSGPNCGCH*iy*nr*cxfiinkfv*iknef*k
kkkk


Frame B:
kl*nelik*hs*lqshqlvmlnqfqnqiifhhyqthhyxhqtqynvvaavvvh*lvllvi
s*vvylselvlllvlslelsmvllvvy*vvqtvdaikfikidnvxl**inlyk*kmnfkk
kkk


Frame C:
nfkmn**ndtlsfnlinw*c*infkik*ffiiikliitxiklntmwwlrw*xinwycw*s
rrwctcrnwyycwycrwncqwccwwfikwsklwmplnllksimxfynk*icinkk*ilkk
kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA449 (SSA449Q) /CSM/SS/SSA4-C/SSA449Q.Seq.d/                        559   e-158
SSM548 (SSM548Q) /CSM/SS/SSM5-B/SSM548Q.Seq.d/                        551   e-156
SSI372 (SSI372Q) /CSM/SS/SSI3-C/SSI372Q.Seq.d/                        551   e-156
SSG177 (SSG177Q) /CSM/SS/SSG1-D/SSG177Q.Seq.d/                        551   e-156
SSE204 (SSE204Q) /CSM/SS/SSE2-A/SSE204Q.Seq.d/                        551   e-156
SSE183 (SSE183Q) /CSM/SS/SSE1-D/SSE183Q.Seq.d/                        551   e-156
SSA383 (SSA383Q) /CSM/SS/SSA3-D/SSA383Q.Seq.d/                        551   e-156
SSI705 (SSI705Q) /CSM/SS/SSI7-A/SSI705Q.Seq.d/                        543   e-154
SSM662 (SSM662Q) /CSM/SS/SSM6-C/SSM662Q.Seq.d/                        537   e-152
SSJ262 (SSJ262Q) /CSM/SS/SSJ2-C/SSJ262Q.Seq.d/                        535   e-151

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   494  e-143  6
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   139  7e-28  6
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    96  9e-14  7
BX247877|BX247877.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50  5e-04  3
AC134761|AC134761.2 Rattus norvegicus clone CH230-279N9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.30  1
AC095390|AC095390.7 Rattus norvegicus clone CH230-7C24, WORKING DRAFT SEQUENCE, 145 unordered pieces.    46  0.30  1
X16827|X16827.1 Dictyostelium discoideum 2C mRNA.                 46  0.30  1
U29535|U29535.2 Caenorhabditis elegans cosmid C25H3, complete sequence.    46  0.30  1
BH134362|BH134362.1 ENTNR27TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32  0.31  3
AZ539052|AZ539052.1 ENTDM33TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32  0.53  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JC6) RecName: Full=HssA/B-like protein 12;  &AC117072_54(AC1...    43   0.004
(Q75JC1) RecName: Full=HssA/B-like protein 16;  &AC117072_59(AC1...    38   0.096
(Q86HG3) RecName: Full=HssA/B-like protein 10;  &AC117072_52(AC1...    37   0.21
CT573213_5346(CT573213|pid:none) Frankia alni str. ACN14A chromo...    37   0.21
AK125511_1(AK125511|pid:none) Homo sapiens cDNA FLJ43523 fis, cl...    36   0.37
AF233430_1(AF233430|pid:none) Chlamydomonas reinhardtii EYE2 (EY...    36   0.37
EF101928_410(EF101928|pid:none) Acanthocystis turfacea Chlorella...    36   0.48
AC117072_57(AC117072|pid:none) Dictyostelium discoideum chromoso...    34   1.8
(Q75JC7) RecName: Full=HssA/B-like protein 11;  &AC117072_53(AC1...    34   1.8
CP000249_3291(CP000249|pid:none) Frankia sp. CcI3, complete geno...    34   1.8

 psg: 0.92  gvh: 0.55  alm: 0.25  top: 0.43  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SSA449 is end

>SSA449E.Seq
TAAACTTTAAAATGAATTAATAAAATGACACTCTTAGCTTCAATCTCATCAATTGGTAAT
GTTAAATCAATTTCAAAATCAAATAATTTTTCATCATTATCAAACTCATCATTACAANCA
TCAAACTCAATACAATGTGGTGGCTGCGGTGGTAGTNCATTAATTGGTACTGTTGGTAAT
CTCGTAGGTGGTGTACTTGTCGGAACTGGTATTATTGTTGGTACTGTCGTTGGAACTGTC
AATGGTGTTGTTGGTGGTTTATTAAGTGGTCCAAACTGTGGATGCCATTAAATTTATTAA
AATCGATAATGTTNTTTTATAATAAATAAATTTGTATAAATAAAAAATGAATTTTAAAAA
AAAAAAAAAAAA