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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA445
Library SS
(Link to library)
Clone ID SSA445
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13900-1
Original site URL
Representative seq. ID SSA445E
(Link to Original site)
Representative DNA sequence 
>SSA445 (SSA445Q) /CSM/SS/SSA4-B/SSA445Q.Seq.d/
GTACAAATACATTGGTTAGTAGTGGTGTTCAAACAACATCTTCAAGTAGTACAAGTAGTA
TTGATAATTTATTAGATGCAACAACTACAACAACTACAACCACTTCGACAACCAATAATA
TATCATCACAATCAAAAAATACAGGATCACATTCATATCCACATACACATACAAGACAAA
TGTCAACTGAAAAAGTTGGACCACAATTTAAAACACCAATTACATCAATTCCACATCATA
TGAGAATGGCAGGTTTTCACAGAGTAAAGCATAACTCTACATCTTCATTGTATATAAAAA
GTACATTATCAACACCTGATAATGATGAAATTTTAAGATGTATGGCCAAATGCCATTATT
GTATCATATTGAAAGAGGTTCACAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGA
AAAATATCCAATTACTAAAAATAAAATTGATTAAAATCAAATCCAACAGTTGAAACTATT
TATAAATTTATTAGAGATATTTTTAAAGCCGAGAAATTAGATAGTGAATGTGCAATTATG
TGTTTAGCTTATATTGAAAGAATAATAACGTATACTGGTATTACATTAAGTTCAATTAAT
TGGAGAAGGATAGTTTTATCAGCATTAATTTTGGCATCAAAAGTTTGGGAAGATCAAAGT
GTTTGGAATGTTGATTTCTTACCAGTATTCGATAATTTAACAGCGGCCGATTTAAATTGT
CTAGAGAGACAATTCCTTGCAATGTTACAATACAACGTTAGTTTGAACGCTTCAATCTAT
GCAAAATACTATTTCGAGTTGAGAAATTTCTCAAAGTTAGACTCCAATCAATTCCCTTTG
AAACCGTTGGATAAATCTGGTGTTAGAAGATTGGAAGATCATTCAAAGGCTTCGGAATAT
AGAGTAAAACCATTTAAAAGAAGTGCTAGTGTTGATCAAATTAATCCACCCNAAATTCAT
ACAAGAGCTGTTATTAATTAAA
sequence update 1999. 2.10
Translated Amino Acid sequence 
vqihwlvvvfkqhlqvvqvvliiy*mqqlqqlqplrqpiiyhhnqkiqdhihihihiqdk
cqlkkldhnlkhqlhqfhii*ewqvfte*sitlhlhci*kvhyqhlimmkf*dvwpnaii
vsy*krftipsknc*nf**rkisny*k*n*LKSNPTVETIYKFIRDIFKAEKLDSECAIM
CLAYIERIITYTGITLSSINWRRIVLSALILASKVWEDQSVWNVDFLPVFDNLTAADLNC
LERQFLAMLQYNVSLNASIYAKYYFELRNFSKLDSNQFPLKPLDKSGVRRLEDHSKASEY
RVKPFKRSASVDQINPPXIHTRAVIN*
Translated Amino Acid sequence (All Frames) 
Frame A:
vqihwlvvvfkqhlqvvqvvliiy*mqqlqqlqplrqpiiyhhnqkiqdhihihihiqdk
cqlkkldhnlkhqlhqfhii*ewqvfte*sitlhlhci*kvhyqhlimmkf*dvwpnaii
vsy*krftipsknc*nf**rkisny*k*n*LKSNPTVETIYKFIRDIFKAEKLDSECAIM
CLAYIERIITYTGITLSSINWRRIVLSALILASKVWEDQSVWNVDFLPVFDNLTAADLNC
LERQFLAMLQYNVSLNASIYAKYYFELRNFSKLDSNQFPLKPLDKSGVRRLEDHSKASEY
RVKPFKRSASVDQINPPXIHTRAVIN*


Frame B:
ykyig**wcsnnifk*yk*y**fircnnynnynhfdnq*yiitikkyritfistytyktn
vn*kswtti*ntnyinstsyengrfsqska*lyifivykkyiint****nfkmygqmpll
yhiergsqfpqktveifseekypitknkid*nqiqqlklfinlleiflkprn*ivnvqlc
v*lilke**rilvlh*vqligeg*fyqh*fwhqkfgkikvfgmlisyqysii*qrpi*iv
*rdnslqcynttlv*tlqsmqntiss*eisqs*tpinsl*nrwinlvledwkiiqrlrni
e*nhlkevlvliklihpkfiqelllik


Frame C:
tntlvssgvqttsssstssidnlldattttttttsttnnissqskntgshsyphthtrqm
stekvgpqfktpitsiphhmrmagfhrvkhnstsslyikstlstpdndeilrcmakchyc
iilkevhnslkkllkflvkkniqllkiklikiksns*nyl*iy*ryf*sreir**mcnyv
fsly*knnnvywyyikfn*lekdsfisinfgikslgrskclec*fltsir*fnsgrfkls
retipcnvtiqr*ferfnlckilfrvekflkvrlqsipfetvg*iwc*kigrsfkgfgi*
skti*kkc*c*sn*stxnsykscy*l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA445 (SSA445Q) /CSM/SS/SSA4-B/SSA445Q.Seq.d/                       1941   0.0
AFO739 (AFO739Q) /CSM/AF/AFO7-B/AFO739Q.Seq.d/                       1376   0.0
AFL240 (AFL240Q) /CSM/AF/AFL2-B/AFL240Q.Seq.d/                       1318   0.0
SLA802 (SLA802Q) /CSM/SL/SLA8-A/SLA802Q.Seq.d/                       1310   0.0
AFN885 (AFN885Q) /CSM/AF/AFN8-D/AFN885Q.Seq.d/                       1277   0.0
AFI243 (AFI243Q) /CSM/AF/AFI2-B/AFI243Q.Seq.d/                       1255   0.0
AFD763 (AFD763Q) /CSM/AF/AFD7-C/AFD763Q.Seq.d/                       1199   0.0
AFJ628 (AFJ628Q) /CSM/AF/AFJ6-B/AFJ628Q.Seq.d/                       1094   0.0
AFD261 (AFD261Q) /CSM/AF/AFD2-C/AFD261Q.Seq.d/                        963   0.0
AFD226 (AFD226Q) /CSM/AF/AFD2-B/AFD226Q.Seq.d/                        955   0.0
own update 2001. 6.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.  1027  0.0  4
L15313|L15313.1 Caenorhabditis elegans cosmid ZK353, complete sequence.    60  5e-05  1
B67199|B67199.1 CpG0015B CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    56  8e-04  1
AJ314911|AJ314911.1 Dictyostelium discoideum DrnA gene for putative RNaseIII, exons 1-3.    44  0.001  4
AY160102|AY160102.1 Dictyostelium discoideum nucleotide exchange factor RasGEF M (gefM) gene, complete cds.    52  0.013  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44  0.015  13
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  0.017  11
AQ045272|AQ045272.1 RPCI11-35D7.TK RPCI-11 Homo sapiens genomic clone RPCI-11-35D7, genomic survey sequence.    46  0.020  2
U23477|U23477.1 Dictyostelium discoideum phosphatidylinositol-4,5-diphosphate 3-kinase (PIK2) mRNA, complete cds.    48  0.14  2
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42  0.19  7
dna update 2003. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116100_4(AC116100|pid:none) Dictyostelium discoideum chromosom...   303   e-135
(Q96P45) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote...   169   1e-41
AF465728_1(AF465728|pid:none) Homo sapiens cyclin fold protein 1...   169   1e-41
AF429969_1(AF429969|pid:none) Homo sapiens cyclin-box carrying p...   169   1e-41
BC149897_1(BC149897|pid:none) Bos taurus cyclin Y, mRNA (cDNA cl...   169   1e-41
(Q8BGU5) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote...   168   3e-41
BC035524_1(BC035524|pid:none) Mus musculus RIKEN cDNA 5730405I09...   168   3e-41
BT059267_1(BT059267|pid:none) Salmo salar clone ssal-rgf-537-296...   166   4e-41
AK057280_1(AK057280|pid:none) Homo sapiens cDNA FLJ32718 fis, cl...   167   7e-41
AB072785_1(AB072785|pid:none) Macaca fascicularis testis cDNA cl...   169   1e-40
protein update 2009. 7. 5
PSORT 

 psg: 0.55  gvh: 0.43  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for SSA445 is cyt
5' end seq. ID SSA445F
5' end seq. 
>SSA445F.Seq
GTACAAATACATTGGTTAGTAGTGGTGTTCAAACAACATCTTCAAGTAGTACAAGTAGTA
TTGATAATTTATTAGATGCAACAACTACAACAACTACAACCACTTCGACAACCAATAATA
TATCATCACAATCAAAAAATACAGGATCACATTCATATCCACATACACATACAAGACAAA
TGTCAACTGAAAAAGTTGGACCACAATTTAAAACACCAATTACATCAATTCCACATCATA
TGAGAATGGCAGGTTTTCACAGAGTAAAGCATAACTCTACATCTTCATTGTATATAAAAA
GTACATTATCAACACCTGATAATGATGAAATTTTAAGATGTATGGCAAATGCATTATTGT
ATCATATTGAAAGAGGTTCACAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGAAA
AATAT----------
Length of 5' end seq. 425
3' end seq. ID SSA445Z
3' end seq. 
>SSA445Z.Seq
----------TTAAGATGTATGGCCAAATGCCATTATTGTATCATATTGAAAGAGGTTCA
CAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGAAAAATATCCAATTACTAAAAAT
AAAATTGATTAAAATCAAATCCAACAGTTGAAACTATTTATAAATTTATTAGAGATATTT
TTAAAGCCGAGAAATTAGATAGTGAATGTGCAATTATGTGTTTAGCTTATATTGAAAGAA
TAATAACGTATACTGGTATTACATTAAGTTCAATTAATTGGAGAAGGATAGTTTTATCAG
CATTAATTTTGGCATCAAAAGTTTGGGAAGATCAAAGTGTTTGGAATGTTGATTTCTTAC
CAGTATTCGATAATTTAACAGCGGCCGATTTAAATTGTCTAGAGAGACAATTCCTTGCAA
TGTTACAATACAACGTTAGTTTGAACGCTTCAATCTATGCAAAATACTATTTCGAGTTGA
GAAATTTCTCAAAGTTAGACTCCAATCAATTCCCTTTGAAACCGTTGGATAAATCTGGTG
TTAGAAGATTGGAAGATCATTCAAAGGCTTCGGAATATAGAGTAAAACCATTTAAAAGAA
GTGCTAGTGTTGATCAAATTAATCCACCCNAAATTCATACAAGAGCTGTTATTAATTAAA
Length of 3' end seq. 650
Connected seq. ID SSA445P
Connected seq. 
>SSA445P.Seq
GTACAAATACATTGGTTAGTAGTGGTGTTCAAACAACATCTTCAAGTAGTACAAGTAGTA
TTGATAATTTATTAGATGCAACAACTACAACAACTACAACCACTTCGACAACCAATAATA
TATCATCACAATCAAAAAATACAGGATCACATTCATATCCACATACACATACAAGACAAA
TGTCAACTGAAAAAGTTGGACCACAATTTAAAACACCAATTACATCAATTCCACATCATA
TGAGAATGGCAGGTTTTCACAGAGTAAAGCATAACTCTACATCTTCATTGTATATAAAAA
GTACATTATCAACACCTGATAATGATGAAATTTTAAGATGTATGGCAAATGCATTATTGT
ATCATATTGAAAGAGGTTCACAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGAAA
AATAT----------TTAAGATGTATGGCCAAATGCCATTATTGTATCATATTGAAAGAG
GTTCACAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGAAAAATATCCAATTACTA
AAAATAAAATTGATTAAAATCAAATCCAACAGTTGAAACTATTTATAAATTTATTAGAGA
TATTTTTAAAGCCGAGAAATTAGATAGTGAATGTGCAATTATGTGTTTAGCTTATATTGA
AAGAATAATAACGTATACTGGTATTACATTAAGTTCAATTAATTGGAGAAGGATAGTTTT
ATCAGCATTAATTTTGGCATCAAAAGTTTGGGAAGATCAAAGTGTTTGGAATGTTGATTT
CTTACCAGTATTCGATAATTTAACAGCGGCCGATTTAAATTGTCTAGAGAGACAATTCCT
TGCAATGTTACAATACAACGTTAGTTTGAACGCTTCAATCTATGCAAAATACTATTTCGA
GTTGAGAAATTTCTCAAAGTTAGACTCCAATCAATTCCCTTTGAAACCGTTGGATAAATC
TGGTGTTAGAAGATTGGAAGATCATTCAAAGGCTTCGGAATATAGAGTAAAACCATTTAA
AAGAAGTGCTAGTGTTGATCAAATTAATCCACCCNAAATTCATACAAGAGCTGTTATTAA
TTAAA
Length of connected seq. 1075
Full length Seq ID SSA445E
Full length Seq. 
>SSA445E.Seq
GTACAAATACATTGGTTAGTAGTGGTGTTCAAACAACATCTTCAAGTAGTACAAGTAGTA
TTGATAATTTATTAGATGCAACAACTACAACAACTACAACCACTTCGACAACCAATAATA
TATCATCACAATCAAAAAATACAGGATCACATTCATATCCACATACACATACAAGACAAA
TGTCAACTGAAAAAGTTGGACCACAATTTAAAACACCAATTACATCAATTCCACATCATA
TGAGAATGGCAGGTTTTCACAGAGTAAAGCATAACTCTACATCTTCATTGTATATAAAAA
GTACATTATCAACACCTGATAATGATGAAATTTTAAGATGTATGGCCAAATGCCATTATT
GTATCATATTGAAAGAGGTTCACAATTCCCTCAAAAAACTGTTGAAATTTTTAGTGAAGA
AAAATATCCAATTACTAAAAATAAAATTGATTAAAATCAAATCCAACAGTTGAAACTATT
TATAAATTTATTAGAGATATTTTTAAAGCCGAGAAATTAGATAGTGAATGTGCAATTATG
TGTTTAGCTTATATTGAAAGAATAATAACGTATACTGGTATTACATTAAGTTCAATTAAT
TGGAGAAGGATAGTTTTATCAGCATTAATTTTGGCATCAAAAGTTTGGGAAGATCAAAGT
GTTTGGAATGTTGATTTCTTACCAGTATTCGATAATTTAACAGCGGCCGATTTAAATTGT
CTAGAGAGACAATTCCTTGCAATGTTACAATACAACGTTAGTTTGAACGCTTCAATCTAT
GCAAAATACTATTTCGAGTTGAGAAATTTCTCAAAGTTAGACTCCAATCAATTCCCTTTG
AAACCGTTGGATAAATCTGGTGTTAGAAGATTGGAAGATCATTCAAAGGCTTCGGAATAT
AGAGTAAAACCATTTAAAAGAAGTGCTAGTGTTGATCAAATTAATCCACCCNAAATTCAT
ACAAGAGCTGTTATTAATTAAA
Length of full length seq. 982