>SSA438 (SSA438Q) /CSM/SS/SSA4-B/SSA438Q.Seq.d/
XXXXXXXXXXACTACCACTGGTGCATATATCGCAAATAGAGTTACAAACAAAATTACCCC
AATTCATGAAAGAATTTATTGTTGTAGATCAGGTTCAGCTGCTGATACTCAAGCAATTTC
TGATTATGTTAGATATTATCTTGAAATGCATACTTCAGAATTATGTGATGAACCAGATGT
AAAAACCGCAGCAAGTCTTTTCCAATTATTATGTTATAGTAATAAAAACAATTTAATGGC
TGGTATTATTGTAGCTGGTTGGGATAAACATCAAGGTGGTAGTGTATACAATATTTCGCT
TGGAGGTTCAATGGTTAAACAACCATTTGCTATTGGTGGTTCAGGTTCAACCTATATTTA
TGGTTATTGTGATTCCAAATTTAAACCAAAAATGACTAAAGATGAATGTATTGAATTTGT
TCAAAATTCATTGGCTCTTGCTATGTTCAGAGATGGTTCATCTGGTGGTGTAATTAGATT
ATGTATTATCGACAAAAACGGTGTAGAACGTAAAATGATTCCTGGAAATAATTTACCAAG
ATTCTGGGAGGGATAATTTTCGAATATTTAAATAATGATTGGAATTAACCATGCATATAA
TATTATTGTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---TTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVK
TAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYG
YCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIIDKNGVERKMIPGNNLPRF
WEG*fsni*imiginhayniivkkkkkkkkkkk

Frame A:
---lplvhisqielqtklpqfmkefivvdqvqllilkqflimldiilkcilqnyvmnqm*
kpqqvfsnyyvivikti*wlvll*lvginikvvvytifrlevqwlnnhlllvvqvqpifm
vivipnlnqk*lkmnvlnlfkihwlllcsemvhlvv*ldyvlstktv*nvk*fleiiyqd
sgrdnfrifk**leltmhiill*rkkkkkkkkkk


Frame B:
---yhwciyrk*sykqnypns*knlll*irfsc*yssnf*lc*ils*nayfrim**trck
nrsksfpiiml***kqfngwyycswlg*tsrw*ciqyfawrfng*tticywwfrfnlylw
ll*fqi*tknd*r*my*icskfigscyvqrwfiwwcn*imyyrqkrcrt*ndswk*ftki
lggiifeylnndwn*pci*yyckekkkkkkkkkk


Frame C:
---TTGAYIANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVK
TAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYG
YCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIIDKNGVERKMIPGNNLPRF
WEG*fsni*imiginhayniivkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF826 (SSF826Q) /CSM/SS/SSF8-B/SSF826Q.Seq.d/                       1195   0.0
SSA438 (SSA438Q) /CSM/SS/SSA4-B/SSA438Q.Seq.d/                       1195   0.0
FC-AO09 (FC-AO09Q) /CSM/FC/FC-AO/FC-AO09Q.Seq.d/                     1195   0.0
FC-252 (FC-252Q) /CSM/CG/CG-FC/FC-252Q.Seq.d/                        1195   0.0
AHB724 (AHB724Q) /CSM/AH/AHB7-A/AHB724Q.Seq.d/                       1134   0.0
FC-BL03 (FC-BL03Q) /CSM/FC/FC-BL/FC-BL03Q.Seq.d/                     1023   0.0
SSH579 (SSH579Q) /CSM/SS/SSH5-D/SSH579Q.Seq.d/                        708   0.0
SSI623 (SSI623Q) /CSM/SS/SSI6-A/SSI623Q.Seq.d/                        646   0.0
FC-BC04 (FC-BC04Q) /CSM/FC/FC-BC/FC-BC04Q.Seq.d/                      577   e-164
SSH712 (SSH712Q) /CSM/SS/SSH7-A/SSH712Q.Seq.d/                        287   1e-76

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB007024|AB007024.1 Dictyostelium discoideum DAPS-1 mRNA for proteasome subunit, complete cds.   642  0.0  2
CD267398|CD267398.1 taa83a06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:O13000 O13000 PROTEASOME SUBUNIT Y ;, mRNA sequence.    46  3e-07  3
AL115450|AL115450.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    46  3e-06  2
AL111182|AL111182.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    46  3e-06  2
BW293068|BW293068.1 Ciona intestinalis cDNA, clone:cigd049h12, 5' end, single read.    48  4e-05  3
BW108451|BW108451.1 Ciona intestinalis cDNA, clone:rcicl068k07, 3' end, single read.    48  5e-05  3
BW189170|BW189170.1 Ciona intestinalis cDNA, clone:ciad086j15, 5' end, single read.    48  5e-05  3
BW245073|BW245073.1 Ciona intestinalis cDNA, clone:citb066j07, 5' end, single read.    48  6e-05  3
BW256588|BW256588.1 Ciona intestinalis cDNA, clone:cign011o14, 5' end, single read.    48  6e-05  3
BW309018|BW309018.1 Ciona intestinalis cDNA, clone:ciht003n14, 5' end, single read.    48  6e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB007024_1(AB007024|pid:none) Dictyostelium discoideum DAPS-1 mR...   336   4e-91
DQ279100_1(DQ279100|pid:none) Branchiostoma lanceolatum proteoso...   226   6e-58
AF517852_1(AF517852|pid:none) Griffithsia japonica isolate Gj138...   224   2e-57
D87689_1(D87689|pid:none) Xenopus laevis mRNA for proteasome sub...   216   6e-55
AF115539_1(AF115539|pid:none) Oncorhynchus mykiss proteasome del...   213   5e-54
BT075454_1(BT075454|pid:none) Osmerus mordax clone omor-eva-510-...   212   6e-54
BT047507_1(BT047507|pid:none) Salmo salar clone ssal-evd-531-051...   212   6e-54
(Q3MHN0) RecName: Full=Proteasome subunit beta type-6;          ...   212   8e-54
(Q60692) RecName: Full=Proteasome subunit beta type-6;          ...   210   2e-53
U13393_1(U13393|pid:none) Mus musculus delta proteasome subunit ...   210   2e-53

 psg: 0.73  gvh: 0.47  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSA438 is nuc

>SSA438Z.Seq
----------ACTACCACTGGTGCATATATCGCAAATAGAGTTACAAACAAAATTACCCC
AATTCATGAAAGAATTTATTGTTGTAGATCAGGTTCAGCTGCTGATACTCAAGCAATTTC
TGATTATGTTAGATATTATCTTGAAATGCATACTTCAGAATTATGTGATGAACCAGATGT
AAAAACCGCAGCAAGTCTTTTCCAATTATTATGTTATAGTAATAAAAACAATTTAATGGC
TGGTATTATTGTAGCTGGTTGGGATAAACATCAAGGTGGTAGTGTATACAATATTTCGCT
TGGAGGTTCAATGGTTAAACAACCATTTGCTATTGGTGGTTCAGGTTCAACCTATATTTA
TGGTTATTGTGATTCCAAATTTAAACCAAAAATGACTAAAGATGAATGTATTGAATTTGT
TCAAAATTCATTGGCTCTTGCTATGTTCAGAGATGGTTCATCTGGTGGTGTAATTAGATT
ATGTATTATCGACAAAAACGGTGTAGAACGTAAAATGATTCCTGGAAATAATTTACCAAG
ATTCTGGGAGGGATAATTTTCGAATATTTAAATAATGATTGGAATTAACCATGCATATAA
TATTATTGTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA