>SSA432 (SSA432Q) /CSM/SS/SSA4-B/SSA432Q.Seq.d/
GTAAACTTTAAAAATGCTTCACTCGAAGAAGCAAACTTTAGTGGTGCAAACCTTAGAGTT
TGTAATTTTAAAAGTGCAAACTTGGAAAATTGTAATTTTCGTGGTGCTGATTTAGCTGGT
GCAAATTTAGAAGATTGTAATCTTAGAGGAGCAAACCTTCATAAAGCAAATTTAATTGGT
GTAAATTTAAAAGGTGCAAATTTCGATATTAGAACTGTTAGTTCAAGATAATTTTAAAAA
AAAAAAAATATATAATTCAACATATAAATACAATTACAATATATATATAAXXXXXXXXXX

VNFKNASLEEANFSGANLRVCNFKSANLENCNFRGADLAGANLEDCNLRGANLHKANLIG
VNLKGANFDIRTVSSR*f*kkkni*fni*iqlqyiy---

Frame A:
VNFKNASLEEANFSGANLRVCNFKSANLENCNFRGADLAGANLEDCNLRGANLHKANLIG
VNLKGANFDIRTVSSR*f*kkkni*fni*iqlqyiy---


Frame B:
*tlkmlhskkqtlvvqtlefvilkvqtwkivifvvli*lvqi*kivileeqtfikqi*lv
*i*kvqisilellvqdnfkkkkiynstykynyniyi---


Frame C:
kl*kcftrrskl*wckp*sl*f*kcklgkl*fswc*fswckfrrl*s*rskps*skfnwc
kfkrckfry*nc*fkiilkkkkyiiqhintitiyi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG749 (VSG749Q) /CSM/VS/VSG7-C/VSG749Q.Seq.d/                        466   e-131
SSH138 (SSH138Q) /CSM/SS/SSH1-B/SSH138Q.Seq.d/                        466   e-131
SSA432 (SSA432Q) /CSM/SS/SSA4-B/SSA432Q.Seq.d/                        466   e-131
SLE602 (SLE602Q) /CSM/SL/SLE6-A/SLE602Q.Seq.d/                        466   e-131
SLB312 (SLB312Q) /CSM/SL/SLB3-A/SLB312Q.Seq.d/                        466   e-131
SLA228 (SLA228Q) /CSM/SL/SLA2-B/SLA228Q.Seq.d/                        466   e-131
SSE747 (SSE747Q) /CSM/SS/SSE7-B/SSE747Q.Seq.d/                         36   0.29
VHM272 (VHM272Q) /CSM/VH/VHM2-C/VHM272Q.Seq.d/                         34   1.1
VFJ647 (VFJ647Q) /CSM/VF/VFJ6-B/VFJ647Q.Seq.d/                         34   1.1
SSL619 (SSL619Q) /CSM/SS/SSL6-A/SSL619Q.Seq.d/                         34   1.1

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL067275|AL067275.1 Drosophila melanogaster genome survey sequence TET3 end of BAC #  BACR15H12 of RPCI-98 library from Drosophila melanogaster (fruit  fly).    48  0.059  1
AL359534|AL359534.10 Human DNA sequence from clone RP11-65K20 on chromosome 20.    38  1.5  3
BX294660|BX294660.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-234D4.    40  1.7  3
CC398604|CC398604.1 PUEEX42TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa236H12, DNA sequence.    42  3.7  1
AC079499|AC079499.1 Mus musculus clone RP23-222D21, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  3.7  1
CB486850|CB486850.1 omykrtdl007049 Oncorhynchus mykiss reproductive Oncorhynchus mykiss cDNA, mRNA sequence.    42  3.7  1
AC006259|AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence.    42  3.7  1
BZ355897|BZ355897.1 SALK_127706.41.30.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_127706.41.30.x, DNA sequence.    42  3.7  1
CC443463|CC443463.1 PUDJY68TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa228L15, DNA sequence.    42  3.7  1
BZ818777|BZ818777.1 PUGDP76TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa344M08, DNA sequence.    42  3.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069350_1(AY069350|pid:none) Drosophila melanogaster LD05823 fu...    84   1e-15
AE014297_80(AE014297|pid:none) Drosophila melanogaster chromosom...    84   1e-15
AK000045_1(AK000045|pid:none) Homo sapiens cDNA FLJ20038 fis, cl...    75   5e-13
BC126039_1(BC126039|pid:none) Xenopus laevis potassium channel t...    75   5e-13
(Q80UN1) RecName: Full=BTB/POZ domain-containing protein KCTD9; ...    75   5e-13
BT046096_1(BT046096|pid:none) Salmo salar clone ssal-rgf-541-207...    75   5e-13
(Q7L273) RecName: Full=BTB/POZ domain-containing protein KCTD9; ...    75   5e-13
AJ720563_1(AJ720563|pid:none) Gallus gallus mRNA for hypothetica...    75   5e-13
CU302301_2(CU302301|pid:none) Zebrafish DNA sequence from clone ...    75   5e-13
AB172166_1(AB172166|pid:none) Macaca fascicularis brain cDNA clo...    75   5e-13

 psg: 0.75  gvh: 0.33  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSA432 is nuc

>SSA432F.Seq
GTAAACTTTAAAAATGCTTCACTCGAAGAAGCAAACTTTAGTGGTGCAAACCTTAGAGTT
TGTAATTTTAAAAGTGCAAACTTGGAAAATTGTAATTTTCGTGGTGCTGATTTAGCTGGT
GCAAATTTAGAAGATTGTAATCTTAGAGGAGCAAACCTTCATAAAGCAAATTTAATTGGT
GTAAATTTAAAAGGTGCAAATTTCGATATTAGAACTGTTAGTTCAAGATAATTTTAAAAA
AAAAAAAATATATAATTCAACATATAAATACAATTACAATATATATATAA----------