>SSA423 (SSA423Q) /CSM/SS/SSA4-A/SSA423Q.Seq.d/
ATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTTTTTAACCTTTGTAAATAGTTCAGA
AATTGATCATCAATACTCACTCACAAGTAGTATTAATGGAAGTAGCAGTGGTGTAAGTAA
TTCAACAGATAACACTGGTTGTGGTGAATACACTTCATGTGGTGATTGTAGAGAAGATAA
AGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCACTGAAGGTACATTCTATGGTACTAA
ACCATTAAATATCAATGGTGCCTGTAAAGATTTCATGTGGATGCAATGTAAAATTCAAGG
TCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTTCTTAATTATTGTCTTCTTCTTTAT
TTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGATAAACACTATCATAACATTCAAGA
TGATGAAACTGAACGTTTGGTTTXXXXXXXXXX

FIIGFFLCLTVFLTFVNSSEIDHQYSLTSSINGSSSGVSNSTDNTGCGEYTSCGDCREDK
GCVWCGSEGICTEGTFYGTKPLNINGACKDFMWMQCKIQGRWAILIAAGGAFLIIVFFFI
CLCCCCCRRKKDKHYHNIQDDETERLV---

Frame A:
ihywflfmfncffnlck*frn*ssilthk*y*wk*qwck*fnr*hwlw*ihfmw*l*rr*
rmclvwirrylh*ryilwy*tikyqwcl*rfhvdam*nsrslgnfnccwwcllnycllly
lplllll*kker*tls*hsr**n*tfg---


Frame B:
FIIGFFLCLTVFLTFVNSSEIDHQYSLTSSINGSSSGVSNSTDNTGCGEYTSCGDCREDK
GCVWCGSEGICTEGTFYGTKPLNINGACKDFMWMQCKIQGRWAILIAAGGAFLIIVFFFI
CLCCCCCRRKKDKHYHNIQDDETERLV---


Frame C:
sllvsfyv*lff*pl*ivqkliinthsqvvlmevavv*viqqitlvvvntlhvvivekik
dvfgvdqkvfalkvhsmvlnh*ismvpvkiscgcnvkfkvvgqf*lllvvps*llssslf
afvvvvveerkintiitfkmmklnvw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI540 (VSI540Q) /CSM/VS/VSI5-B/VSI540Q.Seq.d/                        837   0.0
VSF727 (VSF727Q) /CSM/VS/VSF7-B/VSF727Q.Seq.d/                        837   0.0
VSD385 (VSD385Q) /CSM/VS/VSD3-D/VSD385Q.Seq.d/                        837   0.0
SSL667 (SSL667Q) /CSM/SS/SSL6-C/SSL667Q.Seq.d/                        837   0.0
SSK837 (SSK837Q) /CSM/SS/SSK8-B/SSK837Q.Seq.d/                        837   0.0
SSJ375 (SSJ375Q) /CSM/SS/SSJ3-D/SSJ375Q.Seq.d/                        837   0.0
SSA423 (SSA423Q) /CSM/SS/SSA4-A/SSA423Q.Seq.d/                        837   0.0
SLB315 (SLB315Q) /CSM/SL/SLB3-A/SLB315Q.Seq.d/                        837   0.0
SSE803 (SSE803Q) /CSM/SS/SSE8-A/SSE803Q.Seq.d/                        833   0.0
SSE511 (SSE511Q) /CSM/SS/SSE5-A/SSE511Q.Seq.d/                        829   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC126589|AC126589.4 Rattus norvegicus clone CH230-121A13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    54  0.001  1
AC129283|AC129283.3 Rattus norvegicus clone CH230-6I17, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.007  5
AC117852|AC117852.4 Rattus norvegicus clone CH230-149B22, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38  0.067  6
AC126956|AC126956.5 Rattus norvegicus clone CH230-78A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54  0.075  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48  0.092  1
BQ081435|BQ081435.1 san24d08.y1 Gm-c1084 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1084-4791 5', mRNA sequence.    48  0.092  1
BU419269|BU419269.1 603956870F1 CSEQRBN09 Gallus gallus cDNA clone ChEST925l17 5', mRNA sequence.    48  0.092  1
B27236|B27236.1 T32C9TF TAMU Arabidopsis thaliana genomic clone T32C9, DNA sequence.    38  0.19  2
AC097729|AC097729.7 Rattus norvegicus clone CH230-4I14, WORKING DRAFT SEQUENCE, 4 unordered pieces.    38  0.24  2
AC126725|AC126725.6 Rattus norvegicus clone CH230-6I18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.25  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954216_234(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    42   0.009
AX588489_1(AX588489|pid:none) Sequence 364 from Patent WO02083898.     38   0.12
T21694(T21694)hypothetical protein F33C8.1 - Caenorhabditis eleg...    37   0.21
(Q19981) RecName: Full=Putative protein tag-53; Flags: Precursor...    37   0.21
Z69790_3(Z69790|pid:none) Caenorhabditis elegans Cosmid F33C8, c...    37   0.21
AE014134_1453(AE014134|pid:none) Drosophila melanogaster chromos...    37   0.28
AL954359_1(AL954359|pid:none) Zebrafish DNA sequence from clone ...    36   0.36
BC051121_1(BC051121|pid:none) Mus musculus multiple EGF-like-dom...    36   0.47
CR388098_1(CR388098|pid:none) Zebrafish DNA sequence from clone ...    35   0.61
AF531101_1(AF531101|pid:none) Bos taurus attractin mRNA, complet...    35   1.0

 psg: 0.99  gvh: 0.81  alm: 0.11  top: 0.37  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.25  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: nuclear

>> prediction for SSA423 is exc

>SSA423F.Seq
ATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTTTTTAACCTTTGTAAATAGTTCAGA
AATTGATCATCAATACTCACTCACAAGTAGTATTAATGGAAGTAGCAGTGGTGTAAGTAA
TTCAACAGATAACACTGGTTGTGGTGAATACACTTCATGTGGTGATTGTAGAGAAGATAA
AGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCACTGAAGGTACATTCTATGGTACTAA
ACCATTAAATATCAATGGTGCCTGTAAAGATTTCATGTGGATGCAATGTAAAATTCAAGG
TCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTTCTTAATTATTGTCTTCTTCTTTAT
TTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGATAAACACTATCATAACATTCAAGA
TGATGAAACTGAACGTTTGGTTT----------