>SSA421 (SSA421Q) /CSM/SS/SSA4-A/SSA421Q.Seq.d/
AACATCAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTTCTTGCGCATTTGCA
GTTGGTTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTGGTTATCCAATTATA
GTTGTTGCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGATAGT
TTTTCAAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATTTATT
ACATCTGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAAAGCC
CTTGCATTTTCAATGGCAGGCGGTGTTACAGTTTATGCAACAATTATTACATTCCTTTGG
TTCTTTAATAGACATAATGATGAAGACAATAATTGGTAAAAAAAAAAAAAAAAAAACAAT
TAATAATAATATAAACATCAATAGAAAGAACAAAAAGAAAAATGAAAAAAAAAAAAAAAA
A

NIKKMGHDIKAIIGFSCAFAVGLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDS
FSSEKGTFEDIGLFLTGLFITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLW
FFNRHNDEDNNW*kkkkknn***ykhq*keqkek*kkkkk

Frame A:
NIKKMGHDIKAIIGFSCAFAVGLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDS
FSSEKGTFEDIGLFLTGLFITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLW
FFNRHNDEDNNW*kkkkknn***ykhq*keqkek*kkkkk


Frame B:
tskkwdmilkql*vflahlqlvyylif*hv*fltlviql*llhhifllrsqiyyveieiv
fqvkkehlkilgyf*qvyllhldlqfq*f*piqilfqekplhfqwqavlqfmqqllhsfg
slidimmktiigkkkkkktinnnininrknkkknekkkkk


Frame C:
hqkngt*y*snyrfflricswfii*yfsmysfslwlsnyscciifscsvpkyim*k*r*f
fk*krni*rywvifnrsiyyiwicnsndfspfryyfrkspcifngrrcyslcnnyyiplv
l**t***rq*lvkkkkkkqliii*tsiertkrkmkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA421 (SSA421Q) /CSM/SS/SSA4-A/SSA421Q.Seq.d/                        761   0.0
SSK203 (SSK203Q) /CSM/SS/SSK2-A/SSK203Q.Seq.d/                        753   0.0
SSA242 (SSA242Q) /CSM/SS/SSA2-B/SSA242Q.Seq.d/                        753   0.0
SSD585 (SSD585Q) /CSM/SS/SSD5-D/SSD585Q.Seq.d/                        733   0.0
VSF173 (VSF173Q) /CSM/VS/VSF1-D/VSF173Q.Seq.d/                        559   e-158
SSB817 (SSB817Q) /CSM/SS/SSB8-A/SSB817Q.Seq.d/                        385   e-106
SHL471 (SHL471Q) /CSM/SH/SHL4-C/SHL471Q.Seq.d/                        113   3e-24
VFL441 (VFL441Q) /CSM/VF/VFL4-B/VFL441Q.Seq.d/                         38   0.12
VFD336 (VFD336Q) /CSM/VF/VFD3-B/VFD336Q.Seq.d/                         38   0.12
SFG648 (SFG648Q) /CSM/SF/SFG6-B/SFG648Q.Seq.d/                         38   0.12

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI413826|BI413826.1 602991863F1 NCI_CGAP_Lu33 Mus musculus cDNA clone IMAGE:5147726 5', mRNA sequence.    52  0.006  1
BX248245|BX248245.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-203M16.    36  0.16  8
AQ132465|AQ132465.1 HS_3003_A2_E01_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3003 Col=2 Row=I, DNA sequence.    34  0.27  3
AL133478|AL133478.12 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-18O16.    46  0.39  1
AC016003|AC016003.3 Homo sapiens clone RP11-23I9, WORKING DRAFT SEQUENCE, 30 unordered pieces.    46  0.39  1
AC135982|AC135982.1 Homo sapiens chromosome 15 clone RP11-413D22 map 15, LOW-PASS SEQUENCE SAMPLING.    46  0.39  1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.53  6
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34  0.79  11
AX144639|AX144639.1 Sequence 3361 from Patent WO0134809.          36  1.3  3
AF269319|AF269319.1 Staphylococcus epidermidis strain SR1 clone step.1002a02 genomic sequence.    36  1.3  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294020_35(BX294020|pid:none) Neurospora crassa DNA linkage gro...    98   9e-20
CU640366_582(CU640366|pid:none) Podospora anserina genomic DNA c...    95   9e-19
CR382132_95(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    95   9e-19
AM270330_34(AM270330|pid:none) Aspergillus niger contig An15c003...    94   2e-18
AP007164_57(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...    93   3e-18
CU928170_293(CU928170|pid:none) Kluyveromyces thermotolerans str...    93   3e-18
AM920435_1159(AM920435|pid:none) Penicillium chrysogenum Wiscons...    92   5e-18
CR382125_971(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    91   1e-17
CU928178_205(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    90   3e-17
AE017349_162(AE017349|pid:none) Cryptococcus neoformans var. neo...    87   2e-16

 psg: 0.96  gvh: 0.67  alm: 0.30  top: 0.33  tms: 0.20  mit: 0.30  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 32.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSA421 is mit

>SSA421E.Seq
AACATCAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTTCTTGCGCATTTGCA
GTTGGTTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTGGTTATCCAATTATA
GTTGTTGCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGATAGT
TTTTCAAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATTTATT
ACATCTGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAAAGCC
CTTGCATTTTCAATGGCAGGCGGTGTTACAGTTTATGCAACAATTATTACATTCCTTTGG
TTCTTTAATAGACATAATGATGAAGACAATAATTGGTAAAAAAAAAAAAAAAAAAACAAT
TAATAATAATATAAACATCAATAGAAAGAACAAAAAGAAAAATGAAAAAAAAAAAAAAAA
A