>SSA413 (SSA413Q) /CSM/SS/SSA4-A/SSA413Q.Seq.d/
TAAACTTATATATTACATACACACGAATATAAAATGGATGACACTCAAGTAAACGCTCAA
CTTGACCAAATGAAAAATTTCATTTTACAAGAAGCACAAGATAAAGCCAATGAAATTAAA
ACAAAAGCCACTCAAGAATTCACTTCAGAAAAAGGTAGAATTTTCCAAAACGAAAAAATT
AAAATCATTAAAGAATATGAAAAGAAACAAAAATTAATTGAAGTACAAAAGAAAATCAAT
CTTTCAAATGAATTAAATAAATCACGTTTATCAGTATTAAAAGTTAGAGAAGAATGTCTT
CGTGATGTTATCAAGGAGGCACAAAAGAAACTCGCCACCATCTCTGATGACAAAGATAAA
TATCAAACCATCTTAAAGAATTTAATCTACCAAGGTTTTGTTAAATTAAATGAAAACAAG
ATTCAAGTTGTTGGTCGTAAAGAAGATGCTGGTCTCCTTGAAAAAGCCACCACTGAAGCT
GCTGCTCAATACAAAAAGAACGTCGGTAAATCAATCGATGTTXXXXXXXXXX

*TYILHTHEYKMDDTQVNAQLDQMKNFILQEAQDKANEIKTKATQEFTSEKGRIFQNEKI
KIIKEYEKKQKLIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDK
YQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVGKSID---

Frame A:
*TYILHTHEYKMDDTQVNAQLDQMKNFILQEAQDKANEIKTKATQEFTSEKGRIFQNEKI
KIIKEYEKKQKLIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDK
YQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVGKSID---


Frame B:
kliyyihtnikwmtlk*tlnltk*kisfykkhkikpmklkqkplknslqkkvefsktkkl
kslknmkrnkn*lkykrksifqmn*inhvyqy*kleknvfvmlsrrhkrnsppslmtkin
ikps*ri*stkvlln*mktrfkllvvkkmlvslkkpplklllntkrtsvnqsm---


Frame C:
nlyitytri*ng*hsskrst*pnekfhftrstr*sq*n*nkshsrihfrkr*nfpkrkn*
nh*ri*ketkin*stkenqsfk*ik*itfisiks*rrmss*cyqggtketrhhl**qr*i
snhlkefnlprfc*ik*kqdsscws*rrcwsp*kshh*sccsiqkerr*inrc---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG321 (VSG321Q) /CSM/VS/VSG3-A/VSG321Q.Seq.d/                        613   e-174
VSG237 (VSG237Q) /CSM/VS/VSG2-B/VSG237Q.Seq.d/                        613   e-174
VSF345 (VSF345Q) /CSM/VS/VSF3-B/VSF345Q.Seq.d/                        613   e-174
VSB629 (VSB629Q) /CSM/VS/VSB6-B/VSB629Q.Seq.d/                        613   e-174
SSL168 (SSL168Q) /CSM/SS/SSL1-C/SSL168Q.Seq.d/                        613   e-174
SSG270 (SSG270Q) /CSM/SS/SSG2-C/SSG270Q.Seq.d/                        613   e-174
SSF702 (SSF702Q) /CSM/SS/SSF7-A/SSF702Q.Seq.d/                        613   e-174
SSA413 (SSA413Q) /CSM/SS/SSA4-A/SSA413Q.Seq.d/                        613   e-174
SLE574 (SLE574Q) /CSM/SL/SLE5-D/SLE574Q.Seq.d/                        613   e-174
FC-BD01 (FC-BD01Q) /CSM/FC/FC-BD/FC-BD01Q.Seq.d/                      613   e-174

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U49170|U49170.1 Dictyostelium discoideum V-ATPase E subunit (vatE) mRNA, complete cds.   613  0.0  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.   567  0.0  3
AC123723|AC123723.3 Mus musculus clone RP23-431G3, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  0.21  3
BZ258935|BZ258935.1 CH230-283P8.TVB CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-283P8, DNA sequence.    46  0.43  1
AC130514|AC130514.4 Rattus norvegicus clone CH230-54L23, WORKING DRAFT SEQUENCE, 6 unordered pieces.    40  0.49  4
AC025559|AC025559.4 Homo sapiens chromosome 15 clone RP11-655F8, WORKING DRAFT SEQUENCE, 39 unordered pieces.    38  0.57  3
AL357312|AL357312.8 Human DNA sequence from clone RP11-390F10 on chromosome Xq21.2-22.1.    38  0.73  4
AL034412|AL034412.2 Human DNA sequence from clone RP6-99M1 on chromosome Xp11.1-11.4.    36  0.73  6
AL772292|AL772292.10 Mouse DNA sequence from clone RP23-109C16 on chromosome 2.    44  0.77  3
AC031998|AC031998.5 Mus musculus clone RP23-109C16, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  0.78  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT080201_1(BT080201|pid:none) Caligus clemensi clone ccle-evs-50...   118   1e-25
BC086733_1(BC086733|pid:none) Danio rerio zgc:101757, mRNA (cDNA...   118   1e-25
CU633899_526(CU633899|pid:none) Podospora anserina genomic DNA c...   113   3e-24
DQ213574_1(DQ213574|pid:none) Taeniopygia guttata clone 0058P001...   113   3e-24
AF506222_1(AF506222|pid:none) Danio rerio vacuolar ATP synthase ...   111   1e-23
EF070444_1(EF070444|pid:none) Maconellicoccus hirsutus clone WHM...   111   1e-23
BT076373_1(BT076373|pid:none) Caligus rogercresseyi clone crog-e...   109   5e-23
BT045546_1(BT045546|pid:none) Salmo salar clone ssal-rgf-524-254...   109   5e-23
AY322478_1(AY322478|pid:none) Oreochromis mossambicus V-type H+ ...   108   6e-23
AY588073_1(AY588073|pid:none) Homalodisca coagulata putative vac...   108   8e-23

 psg: 0.56  gvh: 0.14  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSA413 is nuc

>SSA413F.Seq
TAAACTTATATATTACATACACACGAATATAAAATGGATGACACTCAAGTAAACGCTCAA
CTTGACCAAATGAAAAATTTCATTTTACAAGAAGCACAAGATAAAGCCAATGAAATTAAA
ACAAAAGCCACTCAAGAATTCACTTCAGAAAAAGGTAGAATTTTCCAAAACGAAAAAATT
AAAATCATTAAAGAATATGAAAAGAAACAAAAATTAATTGAAGTACAAAAGAAAATCAAT
CTTTCAAATGAATTAAATAAATCACGTTTATCAGTATTAAAAGTTAGAGAAGAATGTCTT
CGTGATGTTATCAAGGAGGCACAAAAGAAACTCGCCACCATCTCTGATGACAAAGATAAA
TATCAAACCATCTTAAAGAATTTAATCTACCAAGGTTTTGTTAAATTAAATGAAAACAAG
ATTCAAGTTGTTGGTCGTAAAGAAGATGCTGGTCTCCTTGAAAAAGCCACCACTGAAGCT
GCTGCTCAATACAAAAAGAACGTCGGTAAATCAATCGATGTT----------