>SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/
XXXXXXXXXXGTTACTAGATATAACGATACCATTGATAAATCATTTTTAGTTACCCATGA
CAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACA
AAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAG
TGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCA
AAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTT
AACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAG
TGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTA
CAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCA
TTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTT
AAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATCA
A

---TRYNDTIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSE
DLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESD
DIELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLN
NDY*l*rs*lylyiinynq

Frame A:
---llditiplinhf*lpmtnkiiklshvqf*kmlknkhktmm*lvlmkanfsqtlynlv
ktwqikvkpl*lph*mvpskenhsnqsli*yqrlnilqs*lpfvwfatmkppfqnvsskv
misn*lvv*inifpfavvativikmkeivpnqakphvililkahhpllhll*tlilmii*
imiinyedpnyictl*iii


Frame B:
---y*i*ryh**iifsyp*qtklssfpmfnfrrc*rtstkl*cnwy**rpifprrcti**
rlgksr*nryncrtrwylpkktipish*fsikg*iyykvncrlygllq*srlfktyrrk*
*yrinwwyr*iyfrlpwllq**sk*rk*yqtkqnrtsfsfskrtircstcckh*s**sfk
**llimkiliifvhykl*s


Frame C:
---TRYNDTIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDVVQFSE
DLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESD
DIELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLN
NDY*l*rs*lylyiinynq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                       1172   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                       1160   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                       1156   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                       1154   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                       1152   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                       1150   0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                       1148   0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                       1146   0.0
SSE242 (SSE242Q) /CSM/SS/SSE2-B/SSE242Q.Seq.d/                       1130   0.0
SSK135 (SSK135Q) /CSM/SS/SSK1-B/SSK135Q.Seq.d/                       1116   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.  1160  0.0  1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.  1100  0.0  1
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56  5e-04  1
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.003  2
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.031  1
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.031  1
BX284634|BX284634.8 Mouse DNA sequence from clone RP23-92B18 on chromosome 11.    48  0.25  3
AC096524|AC096524.7 Rattus norvegicus clone CH230-83D23, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46  0.49  1
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34  1.5  6
BH973506|BH973506.1 odi29h07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    40  1.6  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   160   2e-38
(P04364) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   160   2e-38
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   160   3e-38
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   160   3e-38
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...   159   4e-38
(P68563) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   159   4e-38
K02581_1(K02581|pid:none) Human thymidine kinase mRNA, complete ...   159   7e-38
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene...   159   7e-38
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   158   9e-38
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ...   158   9e-38

 psg: 0.65  gvh: 0.26  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SSA406 is cyt

>SSA406Z.Seq
----------GTTACTAGATATAACGATACCATTGATAAATCATTTTTAGTTACCCATGA
CAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACA
AAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGACGTTGTACAATTTAG
TGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCA
AAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTT
AACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAG
TGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTA
CAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCA
TTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTT
AAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATCA
A