>SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/
XXXXXXXXXXAATGGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAG
TAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGC
ACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGT
CATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATT
ATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTC
TGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATAC
TGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGC
TGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGG
TGGTCAATCTTCGGATAATTGGGTTTGATAATAATAATAATAAAAAAAAAAAAAACAATC
AAAAAAAAAAAAGTAATAATAATAAA

---GEGEDMTIKIADFGLSKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVI
TYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTA
KQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSDNWV******kkkkqsk
kkk****

Frame A:
---mvkvki*qsklqilvlvkylelvkhwkqvvvhqimlhqkf*lvvhmimqsicgqlvs
lpifyyvvshhsmlhlktyylkkf*plimisqnqnglmslnmpklslet*lskiqinvil
pnnvlmtfgslvvinqlvlllistlislkr*rnimtkeevvnlriigfdnnnnkkkknnq
kkksnnnk


Frame B:
---w*r*rydnqncrfws**niwnw*signklwytrlcctrsfnwwfi**csryvvnwch
ylyfimwfptilcfisklii*knfnr*l*fprtrmdscl*tcqsfh*klncqrsrstsyc
qtms**plalw**sinwfcc*splsfr*kdeei**pkkrwsifg*lgliiiiikkkktik
kkkviii


Frame C:
---GEGEDMTIKIADFGLSKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVI
TYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTA
KQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSDNWV******kkkkqsk
kkk****

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/                       1013   0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        965   0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        965   0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                        965   0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                        959   0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/                        950   0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/                        926   0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                        908   0.0
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/                        896   0.0
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/                        894   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   965  0.0  1
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds.    84  6e-26  4
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  4e-11  3
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  4e-09  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    50  8e-08  4
AZ676962|AZ676962.1 ENTJV60TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  2e-04  2
AZ693041|AZ693041.1 ENTJJ36TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  6e-04  2
BH164301|BH164301.1 ENTSK07TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  6e-04  2
BH146759|BH146759.1 ENTPS59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  6e-04  2
AU083681|AU083681.1 Cryptomeria japonica mRNA, clone:CC0359, 5' end, expressed in inner bark.    44  0.019  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   339   3e-92
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   163   3e-39
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...   158   1e-37
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   154   2e-36
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-...   153   3e-36
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...   152   6e-36
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...   152   6e-36
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...   152   6e-36
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c...   152   6e-36
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d...   152   6e-36

 psg: 0.75  gvh: 0.34  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSA402 is cyt

>SSA402Z.Seq
----------AATGGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTGGTCTTAG
TAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGC
ACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGT
CATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATT
ATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTC
TGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATAC
TGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGC
TGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGG
TGGTCAATCTTCGGATAATTGGGTTTGATAATAATAATAATAAAAAAAAAAAAAACAATC
AAAAAAAAAAAAGTAATAATAATAAA