>SSA396 (SSA396Q) /CSM/SS/SSA3-D/SSA396Q.Seq.d/
ATTCTTGCCACTGGTAATGCCAATCCAGCTTTATCATCCGATCCAATCAAAAGTAGAGTT
AAAACAGTTTTATCAACCGATAATGGTCAAACATGGTCTAATTTCTTTGATTAAGGTACC
ATCTATGAATTTGGTAACTATGGTTCTTCAATTATTTTCGCAACTGCTATGAACGATACA
AAGACCTTTTACTATACCTTTGGTCTTGATCAAAAACCAATTGCAATCAATATGACATTA
AAATCAAATGTTGATGTCATCAATATCATTACAAGTCCAAGAAATGATGGAAATAAATTC
ATCTTTTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAAT
GTATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTA
GGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAA
GCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGT
TACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCT
GGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACT
GAAGAAAATTGTACACCAGGTCAAACCTATATCACATCXXXXXXXXXX

ilatgnanpalssdpiksrvktvlstdngqtwsnffd*GTIYEFGNYGSSIIFATAMNDT
KTFYYTFGLDQKPIAINMTLKSNVDVINIITSPRNDGNKFIFLVEDEYDIGQMIGVDLTN
VLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIG
YESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIT---

Frame A:
ilatgnanpalssdpiksrvktvlstdngqtwsnffd*GTIYEFGNYGSSIIFATAMNDT
KTFYYTFGLDQKPIAINMTLKSNVDVINIITSPRNDGNKFIFLVEDEYDIGQMIGVDLTN
VLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIG
YESADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIT---


Frame B:
flplvmpiqlyhpiqskvelkqfyqpimvkhglislikvpsmnlvtmvlqlfsqll*tiq
rpftiplvliknqlqsi*h*nqmlmssislqvqemmeinssf**rmnmisvk*lvli*qm
ychllamipqcnliplvvf*vkkqliellnqipivi*pnkhkfqinivnvqskilnvilv
tkvqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslkkivhqvkpish---


Frame C:
schw*cqssfiirsnqk*s*nsfinr*wsnmv*fl*lryhl*iw*lwffnyfrncyeryk
dlllylws*sktncnqydikikc*chqyhykskk*wk*ihlfsrg*i*yrsndwc*fnkc
iaislr*flnailyhslyfr*knnl*nc*tkyqllydptstnfk*il*mysrrf*m*ywl
rkcrr*qfr**wfylwysiwifrtiels*incfticsnh*rklytrsnlyh---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA396 (SSA396Q) /CSM/SS/SSA3-D/SSA396Q.Seq.d/                       1384   0.0
SLB162 (SLB162Q) /CSM/SL/SLB1-C/SLB162Q.Seq.d/                       1342   0.0
AHL194 (AHL194Q) /CSM/AH/AHL1-D/AHL194Q.Seq.d/                        936   0.0
CHL526 (CHL526Q) /CSM/CH/CHL5-B/CHL526Q.Seq.d/                        902   0.0
VHK292 (VHK292Q) /CSM/VH/VHK2-D/VHK292Q.Seq.d/                        898   0.0
VHA250 (VHA250Q) /CSM/VH/VHA2-C/VHA250Q.Seq.d/                        896   0.0
VHK246 (VHK246Q) /CSM/VH/VHK2-B/VHK246Q.Seq.d/                        892   0.0
VHB464 (VHB464Q) /CSM/VH/VHB4-C/VHB464Q.Seq.d/                        886   0.0
VHP381 (VHP381Q) /CSM/VH/VHP3-D/VHP381Q.Seq.d/                        884   0.0
VHA856 (VHA856Q) /CSM/VH/VHA8-C/VHA856Q.Seq.d/                        884   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC087358|AC087358.9 Homo sapiens chromosome 8, clone RP11-442A17, complete sequence.    34  0.86  6
BX004770|BX004770.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38  1.0  4
AC022967|AC022967.2 Homo sapiens chromosome 7 clone RP11-406N23 map 7, LOW-PASS SEQUENCE SAMPLING.    44  2.3  1
BG619960|BG619960.1 602618158F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE:4731614 5', mRNA sequence.    44  2.3  1
AC097478|AC097478.2 Homo sapiens BAC clone RP11-115D19 from 4, complete sequence.    44  2.3  1
AC079789|AC079789.7 Homo sapiens BAC clone RP11-475B2 from 4, complete sequence.    44  2.3  1
AP001947|AP001947.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2026H24, WORKING DRAFT SEQUENCE, ordered pieces.    44  2.3  1
CC165111|CC165111.1 ii89b08.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ii89b08, DNA sequence.    44  2.3  1
AC079760|AC079760.6 Homo sapiens BAC clone RP11-142A5 from 7, complete sequence.    44  4.5  2
AQ480880|AQ480880.1 RPCI-11-269J20.TV RPCI-11 Homo sapiens genomic clone RPCI-11-269J20, genomic survey sequence.    34  6.5  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014187_491(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    81   4e-14
FM992688_1151(FM992688|pid:none) Candida dubliniensis CD36 chrom...    72   1e-11
AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    70   5e-11
BX842634_18(BX842634|pid:none) Neurospora crassa DNA linkage gro...    69   2e-10
CP001323_564(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    69   2e-10
AM270061_66(AM270061|pid:none) Aspergillus niger contig An03c020...    68   3e-10
AM920431_103(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    64   6e-09
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    62   2e-08
AE017345_319(AE017345|pid:none) Cryptococcus neoformans var. neo...    61   4e-08
AK155045_1(AK155045|pid:none) Mus musculus NOD-derived CD11c +ve...    60   8e-08

 psg: 0.75  gvh: 0.39  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSA396 is cyt

>SSA396F.Seq
ATTCTTGCCACTGGTAATGCCAATCCAGCTTTATCATCCGATCCAATCAAAAGTAGAGTT
AAAACAGTTTTATCAACCGATAATGGTCAAACATGGTCTAATTTCTTTGATTAAGGTACC
ATCTATGAATTTGGTAACTATGGTTCTTCAATTATTTTCGCAACTGCTATGAACGATACA
AAGACCTTTTACTATACCTTTGGTCTTGATCAAAAACCAATTGCAATCAATATGACATTA
AAATCAAATGTTGATGTCATCAATATCATTACAAGTCCAAGAAATGATGGAAATAAATTC
ATCTTTTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAAT
GTATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTA
GGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAA
GCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGT
TACGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCT
GGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACT
GAAGAAAATTGTACACCAGGTCAAACCTATATCACATC----------