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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA386
Library SS
(Link to library)
Clone ID SSA386
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04380-1
Original site URL
Representative seq. ID SSA386E
(Link to Original site)
Representative DNA sequence 
>SSA386 (SSA386Q) /CSM/SS/SSA3-D/SSA386Q.Seq.d/
CACCGGTTGGAGCTTACTAAATTAGGTAAAGAAATATCTAGAAAAAAAATAAAAAAAATA
ATAATAAAATAAAATTAATANCAAAGTATTAAAAGTAAGAGATTGGTTATTTAAAATAAT
TNCCCAATATTAGAAAGCTATCATGTTTACGAATAATTTGACCATTATTATCGTATTGTG
GCTCTCTATTTTGGTCTTTTATAGTATATATATTTGATCATGAACGGAACCTGGGAATCC
CTCAGGATTTAGTAACAATAATCTGTATGATCTAGTGCATACCTCACAATGAAATTTGAC
CACATGACTTTGCTTTTACCAGAATAGTATTTTTTTTTTGGATTTGGTAATCAGTGGGAG
TTTCAATAACAATAGAGGTAGATTCAGCAGCAATTGCACGATAAAGCACATTAGATATAG
GATGTTTTAAAAAGCCAACTGATTCAACAAGTTTATCATATCTCTTTTCCATTATTTCCT
TGCATACAACTCAAAGTGAACGAATGGTTTGGCTATAGTGTTTTTGAAATGTTTTTGGAC
TAATACCAAAAGTAACACATATCTCATTAACTGGAAGATATTGTTTCCAACACAAGAGAG
TCTAACACAAAAAAATAATAAAAAAATAATGTTATTAATTTAAAAAAAAAAAAAA
sequence update 1999. 2.10
Translated Amino Acid sequence 
tgwslln*vkkylekk*kk***nkinxkvlkvrdwlfkiixqy*kaimftnnltiiivlw
lsilvfysiyi*s*tepgnpsgfsnnnlydlvhtsq*nltt*lcfyqnsiffldlvisgs
fnnnrgrfssnctikhiryrmf*kan*fnkfiislfhyflaynsk*TNGLAIVFLKCFWT
NTKSNTYLINWKILFPTQESLTQKNNKKIMLLI*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hrleltklgkeisrkkikkiiik*n*xqsikskrlvi*nnxpilesyhvye*fdhyyriv
alyfgll*yiylimngtweslri**q*sv*ssayltmkfdhmtlllpe*yfffgfgnqwe
fq*q*r*iqqqlhdkah*i*dvlksqliqqvyhisfplfpciqlkvnewfgysvfemfld
*yqk*hish*ledivsntresntkk**knnvinlkkkk


Frame B:
tgwslln*vkkylekk*kk***nkinxkvlkvrdwlfkiixqy*kaimftnnltiiivlw
lsilvfysiyi*s*tepgnpsgfsnnnlydlvhtsq*nltt*lcfyqnsiffldlvisgs
fnnnrgrfssnctikhiryrmf*kan*fnkfiislfhyflaynsk*TNGLAIVFLKCFWT
NTKSNTYLINWKILFPTQESLTQKNNKKIMLLI*kkkk


Frame C:
pvgay*ir*rni*kknkknnnkiklixky*k*eigylk*xpnirklsclrii*pllsycg
slfwsfivyifdhernlgipqdlvtiicmi*ciphnei*phdfaftrivfffwiw*svgv
sitievdsaaiar*stldigcfkkptdstslsylfsiislhttqsermvwl*cf*nvfgl
ipkvthisltgrycfqhkrv*hkkiikk*cy*fkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA386 (SSA386Q) /CSM/SS/SSA3-D/SSA386Q.Seq.d/                        987   0.0
SSI770 (SSI770Q) /CSM/SS/SSI7-C/SSI770Q.Seq.d/                        232   5e-60
SSD159 (SSD159Q) /CSM/SS/SSD1-C/SSD159Q.Seq.d/                         82   1e-14
AFI801 (AFI801Q) /CSM/AF/AFI8-A/AFI801Q.Seq.d/                         36   0.65
VHP810 (VHP810Q) /CSM/VH/VHP8-A/VHP810Q.Seq.d/                         34   2.6
VHP750 (VHP750Q) /CSM/VH/VHP7-C/VHP750Q.Seq.d/                         34   2.6
VHO562 (VHO562Q) /CSM/VH/VHO5-C/VHO562Q.Seq.d/                         34   2.6
VHN736 (VHN736Q) /CSM/VH/VHN7-B/VHN736Q.Seq.d/                         34   2.6
VHN723 (VHN723Q) /CSM/VH/VHN7-A/VHN723Q.Seq.d/                         34   2.6
VHM894 (VHM894Q) /CSM/VH/VHM8-D/VHM894Q.Seq.d/                         34   2.6
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   533  0.0  4
AP003190|AP003190.2 Clostridium perfringens DNA, complete genome, section 6/10.    42  0.26  7
CC145699|CC145699.1 ZMMBBb0005J01.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0005J01 5', genomic survey sequence.    46  0.53  1
CC142491|CC142491.1 NDL.68A24.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.68A24, DNA sequence.    38  1.8  2
AC011646|AC011646.3 Homo sapiens clone RP11-15B2, WORKING DRAFT SEQUENCE, 37 unordered pieces.    44  2.1  1
BE505868|BE505868.1 dc38e03.x1 NICHD XGC Emb3 Xenopus laevis cDNA clone IMAGE:3399388 3', mRNA sequence.    44  2.1  1
AC012347|AC012347.3 Homo sapiens clone RP11-16G18, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44  2.1  1
BE575592|BE575592.1 dc59d02.x1 NICHD XGC Emb1 Xenopus laevis cDNA clone IMAGE:3401379 3', mRNA sequence.    44  2.1  1
AC084875|AC084875.2 Homo sapiens clone RP11-196K1, WORKING DRAFT SEQUENCE, 28 unordered pieces.    44  2.1  1
BZ754779|BZ754779.1 PUDBP28TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa150E08, DNA sequence.    44  2.1  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54D47) RecName: Full=UPF0520 protein A;                             122   7e-27
(Q54XW2) RecName: Full=UPF0520 protein C;                             112   1e-23
(Q54D45) RecName: Full=UPF0520 protein E;                              95   2e-18
(Q54W58) RecName: Full=UPF0520 protein D;                              92   1e-17
CP000852_1914(CP000852|pid:none) Caldivirga maquilingensis IC-16...    33   9.5
protein update 2009. 3. 4
PSORT 

 psg: 0.72  gvh: 0.54  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for SSA386 is nuc
5' end seq. ID SSA386F
5' end seq. 
>SSA386F.Seq
CACCGGTTGGAGCTTACTAAATTAGGTAAAGAAATATCTAGAAAAAAAATAAAAAAAATA
ATAATAAAATAAAATTAATAACAAAGTATTAAAAGTAAGAGATTGGTTATTTAAAATAAT
TACCCAATATTAGAAAGCTATCATGTTTACGAATAATTTGACCATTATTATCGTATTGTG
GCTCTCTATTTTGGTCTTTTATAGTATATATATTTGATCATGAACGGAACCTGGGAATCC
CTCAGGATTTAGTAACAATAATCTGTATGATCTAGTGCATACCTCACAATGAAATTTGAC
CACATGACTTTGCTTTTACCAGAATAGTATTTTTTTTTTGGATTTGGTAATCAGTGGGAG
TTTCAATAACAATAGAGGTAGATTCAGCAGCAATTGCACGATAAAGCACATTAGATATAG
GATGTTTTAAAAAGCCAACTGATTCAACAAGTTTATCATATCTCTTTTCCATTATTTCCT
TGCATACAACTCAAAGTGAACGAATGGTTTGGCTATAGTGTTTTTGAAATGTTTTTGGAC
TAATACCAAAAGTAACACATATCTCATTAACTGGAAGATATTGTTTCCAACACAAGAGAG
TCTAACACAAAA----------
Length of 5' end seq. 612
3' end seq. ID SSA386Z
3' end seq. 
>SSA386Z.Seq
----------TACCAAAGTATTAAAAGTAAGAGATTGGTTATTTAAAATAATTCCCCAAT
ATTAGAAAGCTATCATGTTTACGAATAATTTGACCATTATTATCGTATTGTGGCTCTCTA
TTTTGGTCTTTTATAGTATATATATTTGATCATGAACGGAACCTGGGAATCCCTCAGGAT
TTAGTAACAATAATCTGTATGATCTAGTGCATACCTCACAATGAAATTTGACCACATGAC
TTTGCTTTTACCAGAATAGTATTTTTTTTTTGGATTTGGTAATCAGTGGGAGTTTCAATA
ACAATAGAGGTAGATTCAGCAGCAATTGCACGATAAAGCACATTAGATATAGGATGTTTT
AAAAAGCCAACTGATTCAACAAGTTTATCATATCTCTTTTCCATTATTTCCTTGCATACA
ACTCAAAGTGAACGAATGGTTTGGCTATAGTGTTTTTGAAATGTTTTTGGACTAATACCA
AAAGTAACACATATCTCATTAACTGGAAGATATTGTTTCCAACACAAGAGAGTCTAACAC
AAAAAAATAATAAAAAAATAATGTTATTAATTTAAAAAAAAAAAAAA
Length of 3' end seq. 577
Connected seq. ID SSA386P
Connected seq. 
>SSA386P.Seq
CACCGGTTGGAGCTTACTAAATTAGGTAAAGAAATATCTAGAAAAAAAATAAAAAAAATA
ATAATAAAATAAAATTAATAACAAAGTATTAAAAGTAAGAGATTGGTTATTTAAAATAAT
TACCCAATATTAGAAAGCTATCATGTTTACGAATAATTTGACCATTATTATCGTATTGTG
GCTCTCTATTTTGGTCTTTTATAGTATATATATTTGATCATGAACGGAACCTGGGAATCC
CTCAGGATTTAGTAACAATAATCTGTATGATCTAGTGCATACCTCACAATGAAATTTGAC
CACATGACTTTGCTTTTACCAGAATAGTATTTTTTTTTTGGATTTGGTAATCAGTGGGAG
TTTCAATAACAATAGAGGTAGATTCAGCAGCAATTGCACGATAAAGCACATTAGATATAG
GATGTTTTAAAAAGCCAACTGATTCAACAAGTTTATCATATCTCTTTTCCATTATTTCCT
TGCATACAACTCAAAGTGAACGAATGGTTTGGCTATAGTGTTTTTGAAATGTTTTTGGAC
TAATACCAAAAGTAACACATATCTCATTAACTGGAAGATATTGTTTCCAACACAAGAGAG
TCTAACACAAAA----------TACCAAAGTATTAAAAGTAAGAGATTGGTTATTTAAAA
TAATTCCCCAATATTAGAAAGCTATCATGTTTACGAATAATTTGACCATTATTATCGTAT
TGTGGCTCTCTATTTTGGTCTTTTATAGTATATATATTTGATCATGAACGGAACCTGGGA
ATCCCTCAGGATTTAGTAACAATAATCTGTATGATCTAGTGCATACCTCACAATGAAATT
TGACCACATGACTTTGCTTTTACCAGAATAGTATTTTTTTTTTGGATTTGGTAATCAGTG
GGAGTTTCAATAACAATAGAGGTAGATTCAGCAGCAATTGCACGATAAAGCACATTAGAT
ATAGGATGTTTTAAAAAGCCAACTGATTCAACAAGTTTATCATATCTCTTTTCCATTATT
TCCTTGCATACAACTCAAAGTGAACGAATGGTTTGGCTATAGTGTTTTTGAAATGTTTTT
GGACTAATACCAAAAGTAACACATATCTCATTAACTGGAAGATATTGTTTCCAACACAAG
AGAGTCTAACACAAAAAAATAATAAAAAAATAATGTTATTAATTTAAAAAAAAAAAAAA
Length of connected seq. 1189
Full length Seq ID SSA386E
Full length Seq. 
>SSA386E.Seq
CACCGGTTGGAGCTTACTAAATTAGGTAAAGAAATATCTAGAAAAAAAATAAAAAAAATA
ATAATAAAATAAAATTAATANCAAAGTATTAAAAGTAAGAGATTGGTTATTTAAAATAAT
TNCCCAATATTAGAAAGCTATCATGTTTACGAATAATTTGACCATTATTATCGTATTGTG
GCTCTCTATTTTGGTCTTTTATAGTATATATATTTGATCATGAACGGAACCTGGGAATCC
CTCAGGATTTAGTAACAATAATCTGTATGATCTAGTGCATACCTCACAATGAAATTTGAC
CACATGACTTTGCTTTTACCAGAATAGTATTTTTTTTTTGGATTTGGTAATCAGTGGGAG
TTTCAATAACAATAGAGGTAGATTCAGCAGCAATTGCACGATAAAGCACATTAGATATAG
GATGTTTTAAAAAGCCAACTGATTCAACAAGTTTATCATATCTCTTTTCCATTATTTCCT
TGCATACAACTCAAAGTGAACGAATGGTTTGGCTATAGTGTTTTTGAAATGTTTTTGGAC
TAATACCAAAAGTAACACATATCTCATTAACTGGAAGATATTGTTTCCAACACAAGAGAG
TCTAACACAAAAAAATAATAAAAAAATAATGTTATTAATTTAAAAAAAAAAAAAA
Length of full length seq. 655