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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA365
Library SS
(Link to library)
Clone ID SSA365
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04375-1
Original site URL
Representative seq. ID SSA365E
(Link to Original site)
Representative DNA sequence 
>SSA365 (SSA365Q) /CSM/SS/SSA3-C/SSA365Q.Seq.d/
CTTTAGGTCAAAAAGAATCTAGAAATCATATTTCATTATTATTATTAGAAGCAATTTCAA
ATGCTGCTAGAAAGAGTTGGATCTTTTTCATCTCTTCTTTCTTATTATCAAGAAATACCG
CTTGGAAAAGACAAACAGGATTATTTTTTTGTACAATCTATTCACTATATTTAGCTTTCT
TCCCTCAATATTTACCTTGGACAAATTATTTTAATATATTCGCCTCACTTTTATATGTTA
CCGCTGCGTGGAGCACTGCAAGAAGTGGTTCAAGCTTTAGAGAAATATTTAATTTATTAT
AAAAAAAAAAAAAAAACAAAATCTTTATTTATCCAATAAAAAAAAAAGA
sequence update 1997. 7. 5
Translated Amino Acid sequence 
LGQKESRNHISLLLLEAISNAARKSWIFFISSFLLSRNTAWKRQTGLFFCTIYSLYLAFF
PQYLPWTNYFNIFASLLYVTAAWSTARSGSSFREIFNLL*kkkknkifiypikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
l*vkknleiifhyyy*kqfqmllervgsfssllsyyqeiplgkdkqdyffvqsihyi*ls
slniylgqiiliysphfymlplrgalqevvqalekyliyykkkkktkslfiq*kkk


Frame B:
frskri*ksyfiiiirsnfkcc*keldlfhlffliikkyrlektnriiflynlftifsfl
psiftldklf*yirltficyrcvehckkwfkl*rni*fiikkkkkqnlylsnkkkr


Frame C:
LGQKESRNHISLLLLEAISNAARKSWIFFISSFLLSRNTAWKRQTGLFFCTIYSLYLAFF
PQYLPWTNYFNIFASLLYVTAAWSTARSGSSFREIFNLL*kkkknkifiypikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA365 (SSA365Q) /CSM/SS/SSA3-C/SSA365Q.Seq.d/                        553   e-157
VHP794 (VHP794Q) /CSM/VH/VHP7-D/VHP794Q.Seq.d/                         40   0.022
VHN652 (VHN652Q) /CSM/VH/VHN6-C/VHN652Q.Seq.d/                         40   0.022
VHN606 (VHN606Q) /CSM/VH/VHN6-A/VHN606Q.Seq.d/                         40   0.022
VHJ714 (VHJ714Q) /CSM/VH/VHJ7-A/VHJ714Q.Seq.d/                         40   0.022
VHG181 (VHG181Q) /CSM/VH/VHG1-D/VHG181Q.Seq.d/                         40   0.022
VHG104 (VHG104Q) /CSM/VH/VHG1-A/VHG104Q.Seq.d/                         40   0.022
CHM177 (CHM177Q) /CSM/CH/CHM1-D/CHM177Q.Seq.d/                         40   0.022
CHF508 (CHF508Q) /CSM/CH/CHF5-A/CHF508Q.Seq.d/                         40   0.022
VSD730 (VSD730Q) /CSM/VS/VSD7-B/VSD730Q.Seq.d/                         38   0.085
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X81451|X81451.1 N.frontalis enolase gene, promotor region.        38  0.010  3
AC145331|AC145331.2 Medicago truncatula clone mth2-8o7, WORKING DRAFT SEQUENCE, 19 unordered pieces.    38  0.016  4
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    34  0.025  7
CC555568|CC555568.1 CH240_462P15.T7 CHORI-240 Bos taurus genomic clone CH240_462P15, genomic survey sequence.    46  0.043  2
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    34  0.047  7
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                 32  0.084  6
AL954146|AL954146.7 Zebrafish DNA sequence from clone CH211-213I6 in linkage group 17.    36  0.12  6
AC002333|AC002333.3 Arabidopsis thaliana chromosome 2 clone F18O19 map CIC10F02, complete sequence.    34  0.19  6
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    34  0.19  5
AL603753|AL603753.3 Human DNA sequence from clone RP13-11B7 on chromosome Xp11.4-21.2.    42  0.25  4
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ937763_9(AJ937763|pid:none) Uncultured bacterium fosmid clone ...    34   1.8
AJ010592_94(AJ010592|pid:none) Guillardia theta DNA for complete...    32   9.0
CP000916_1522(CP000916|pid:none) Thermotoga neapolitana DSM 4359...    32   9.0
protein update 2009. 3. 4
PSORT 

 psg: 0.83  gvh: 0.64  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSA365 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSA365E
Full length Seq. 
>SSA365E.Seq
CTTTAGGTCAAAAAGAATCTAGAAATCATATTTCATTATTATTATTAGAAGCAATTTCAA
ATGCTGCTAGAAAGAGTTGGATCTTTTTCATCTCTTCTTTCTTATTATCAAGAAATACCG
CTTGGAAAAGACAAACAGGATTATTTTTTTGTACAATCTATTCACTATATTTAGCTTTCT
TCCCTCAATATTTACCTTGGACAAATTATTTTAATATATTCGCCTCACTTTTATATGTTA
CCGCTGCGTGGAGCACTGCAAGAAGTGGTTCAAGCTTTAGAGAAATATTTAATTTATTAT
AAAAAAAAAAAAAAAACAAAATCTTTATTTATCCAATAAAAAAAAAAGA
Length of full length seq. 349