SSA362
Library SS
(Link to library)
Clone ID SSA362
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SSA362Z
(Link to Original site)
Representative DNA sequence
>SSA362 (SSA362Q) /CSM/SS/SSA3-C/SSA362Q.Seq.d/
XXXXXXXXXXAGGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCA
CTTTAGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGATAAAG
AAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTC
GTACTCTTTCTGATTATAACATTCAAAAGGAGTCCACTCTCCATTTAGTTCTTAGATTAA
GAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGTTG
AAGGATCTGATAATATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCAC
CAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTG
ATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTTTTAAGATTAAGAGGTGGTCTTT
AAAAACTATAAATAAAACCACTTGTAAATATGTAAATCAAATTTCAATAAAAAAAAAAAA
AACAATTTTTGTTACTTTA
sequence update 1997. 7.25
Translated Amino Acid sequence
---GGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPP
DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL*kl*ikplvnm*ikfq*kkkk
qflll


Translated Amino Acid sequence (All Frames)
Frame A:
---GGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPP
DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL*kl*ikplvnm*ikfq*kkkk
qflll


Frame B:
---evvcksllklslvklsl*klkvliilkm*rlkfkikkvfhqinkd*slpvnn*kmvv
lfliitfkrsplsi*fld*evvcksllklslvklspwrlkdliilkmlkpkfkikkvfhq
innvsfllvnn*kmvvlslitifkknqlst*f*d*evvfknyk*nhl*icksnfnkkkkn
nfcyf


Frame C:
---rwyanlc*nshw*nyhfrs*rf**y*kckg*nsr*rrystrstkinlcr*tirrwsy
sf*l*hskgvhspfss*ikrwyanlc*nshw*nyhlgg*ri**y*kc*sqnsr*rrystr
sttshfcw*tirrwsysl*lqyskrinsplsfkikrwslktinkttckyvnqisikkkkt
ifvtl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA362 (SSA362Q) /CSM/SS/SSA3-C/SSA362Q.Seq.d/ 1027 0.0
SSK786 (SSK786Q) /CSM/SS/SSK7-D/SSK786Q.Seq.d/ 1023 0.0
SSK744 (SSK744Q) /CSM/SS/SSK7-B/SSK744Q.Seq.d/ 1023 0.0
SSH869 (SSH869Q) /CSM/SS/SSH8-C/SSH869Q.Seq.d/ 1023 0.0
SSH628 (SSH628Q) /CSM/SS/SSH6-B/SSH628Q.Seq.d/ 1023 0.0
SSG546 (SSG546Q) /CSM/SS/SSG5-B/SSG546Q.Seq.d/ 1023 0.0
SSG538 (SSG538Q) /CSM/SS/SSG5-B/SSG538Q.Seq.d/ 1023 0.0
SSF760 (SSF760Q) /CSM/SS/SSF7-C/SSF760Q.Seq.d/ 1023 0.0
SSC659 (SSC659Q) /CSM/SS/SSC6-C/SSC659Q.Seq.d/ 1023 0.0
FC-AM17 (FC-AM17Q) /CSM/FC/FC-AM/FC-AM17Q.Seq.d/ 1023 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 1017 0.0 1
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 989 0.0 1
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 708 0.0 2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 628 e-176 2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 595 e-169 2
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 507 e-141 3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 507 e-141 3
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 507 e-141 3
U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds. 276 e-135 5
CB305323|CB305323.1 102 Iso cDNA Isotricha sp. BBF-2003 cDNA clone I102 similar to ubiquitin, mRNA sequence. 258 e-110 2
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 283 2e-75
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 283 2e-75
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 281 6e-75
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 281 6e-75
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 281 6e-75
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 274 1e-72
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 274 1e-72
DQ115333_1(DQ115333|pid:none) Caenorhabditis remanei ubiquitin p... 274 1e-72
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 274 1e-72
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 274 1e-72
protein update 2009. 6. 8
PSORT

psg: 0.78 gvh: 0.38 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSA362 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA362Z
3' end seq.
>SSA362Z.Seq
----------AGGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCA
CTTTAGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATTCAAGATAAAG
AAGGTATTCCACCAGATCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGATGGTC
GTACTCTTTCTGATTATAACATTCAAAAGGAGTCCACTCTCCATTTAGTTCTTAGATTAA
GAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACTATCACCTTGGAGGTTG
AAGGATCTGATAATATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCAC
CAGATCAACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTG
ATTACAATATTCAAAAAGAATCAACTCTCCACTTAGTTTTAAGATTAAGAGGTGGTCTTT
AAAAACTATAAATAAAACCACTTGTAAATATGTAAATCAAATTTCAATAAAAAAAAAAAA
AACAATTTTTGTTACTTTA
Length of 3' end seq. 549
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -