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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA348
Library SS
(Link to library)
Clone ID SSA348
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16217-1
Original site URL
Representative seq. ID SSA348E
(Link to Original site)
Representative DNA sequence 
>SSA348 (SSA348Q) /CSM/SS/SSA3-B/SSA348Q.Seq.d/
TGCACTCTGAAGAGAGTGAACGTTCAAACAATAACAACGAAGAATCTTGTGTCTATTGTA
GTTTAATGGGTTTTGGTCCAGCTTGGACAATGTTTGTTTTCGGTTTCTTTATTCCAATGT
GTTGGATCATTGGTAGTTTCTATCTATTCTCTCCAACTCGTGTCAAATGGGTAAGTGGTC
TAATGAATTTCGTTGCTACCATCATCTTTATTTTAGCTCTCTCTTTGATGACTTTTTACG
TTCCAGAATTGGCTGCCCTTATCATTGCTCCTGCTTTAATTGTTATGGGTTTTGTAGTTT
GTATTCTAGTCGGTTTCTTTAGACAAAGAAATAGAGAAAAGAAACGTTATCTCCGTGAAA
GAATTAAGTTAATGCAAGCTGATGGTTATAAAAATTTGGCTGACCATGTTAGTAGCTTTA
GAGTTGATTACAACCAACATCAAGCAAAAGCAAATAATAATATGTTAAAGAAAAAGAAAA
AGAGAATTCAAATGGAAAAATTAAATTCACAAAGAAATTATGGTGGTATTAACACAACTG
ATAAAATAAATAATTCAAATATTAATAATATTGGTATAAATAATCCAAATAATATTCAAA
ATAATCAAATTAATAATATATTAAATAATAGTAATAATAATATTAATAATAATAATCAAG
AAAGATTAAGTGACTCAAGTAAATCCTCATTTATTGATGACTTTAAAAAATCATCAAGTA
ATAATCATAAGGATTTCCATGAAATTCCACTTCAAGAGATCATTCAAAGTATTGGTATTA
AGGGTAAAAAACAATCATCATCATCTGCCAAAACAAGATCACTCTCTTCATCAAACTTGG
TTAACTCTGTAAATTCAAATTTAGTAAATAGCACAAACTCAAATAATACATCAATCTTAT
TAAAATCTCATAATTCAAATAGTCCTTTATTTAATTCAACTCCAACTCCAACTAATGTTG
TATTTAATTCAATTGAAGTTTAAATGATTGAAAGAAAATGAAAAAAATAAAAANAAAATA
TATTTATACATAAAAAAAAAAAAAAA
sequence update 1999. 2.10
Translated Amino Acid sequence 
HSEESERSNNNNEESCVYCSLMGFGPAWTMFVFGFFIPMCWIIGSFYLFSPTRVKWVSGL
MNFVATIIFILALSLMTFYVPELAALIIAPALIVMGFVVCILVGFFRQRNREKKRYLRER
IKLMQADGYKNLADHVSSFRVDYNQHQAKANNNMLKKKKKRIQMEKLNSQRNYGGINTTD
KINNSNINNIGINNPNNIQNNQINNILNNSNNNINNNNQERLSDSSKSSFIDDFKKSSSN
NHKDFHEIPLQEIIQSIGIKGKKQSSSSAKTRSLSSSNLVNSVNSNLVNSTNSNNTSILL
KSHNSNSPLFNSTPTPTNVVFNSIEV*mierk*kk*kxnifihkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ctlkrvnvqtittknlvsivv*wvlvqlgqclfsvslfqcvgslvvsiyslqlvsng*vv
**isllpsslf*lsl**lftfqnwlplsllll*llwvl*fvf*svsldkeiekrnvisvk
els*cklmvikiwltmlvalelittnikqkqiiic*rkrkrefkwkn*ihkeimvvltql
ik*iiqiliilv*iiqiifkiikliiy*iiviiiliiiikkd*vtqvnphllmtlknhqv
iiirismkfhfkrsfkvlvlrvknnhhhlpkqdhslhqtwltl*iqi**iaqtqiihqsy
*nliiqivlyliqlqlqlmlyliqlkfk*lkeneknkxkiylyikkkk


Frame B:
al*re*tfkq*qrrilcll*fngfwssldnvcfrflysnvldhw*flsilsnscqmgkws
nefrcyhhlyfsslfddflrsrigcpyhcscfncygfcslyssrfl*tkk*rketlsp*k
n*vnas*wl*kfg*pc**l*s*lqptssksk**yvkekekensngkikftkklwwy*hn*
*nk*fky**ywyk*sk*ysk*sn**yik*****y****srkik*lk*iliy**l*kiik*
*s*gfp*nstsrdhskywy*g*ktiiiicqnkitlfiklg*lckfkfsk*hklk*yinli
kis*fk*sfi*fnsnsn*cci*fn*slnd*kkmkkikxkyiyt*kkkk


Frame C:
HSEESERSNNNNEESCVYCSLMGFGPAWTMFVFGFFIPMCWIIGSFYLFSPTRVKWVSGL
MNFVATIIFILALSLMTFYVPELAALIIAPALIVMGFVVCILVGFFRQRNREKKRYLRER
IKLMQADGYKNLADHVSSFRVDYNQHQAKANNNMLKKKKKRIQMEKLNSQRNYGGINTTD
KINNSNINNIGINNPNNIQNNQINNILNNSNNNINNNNQERLSDSSKSSFIDDFKKSSSN
NHKDFHEIPLQEIIQSIGIKGKKQSSSSAKTRSLSSSNLVNSVNSNLVNSTNSNNTSILL
KSHNSNSPLFNSTPTPTNVVFNSIEV*mierk*kk*kxnifihkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA348 (SSA348Q) /CSM/SS/SSA3-B/SSA348Q.Seq.d/                        894   0.0
SLA584 (SLA584Q) /CSM/SL/SLA5-D/SLA584Q.Seq.d/                        868   0.0
SFC584 (SFC584Q) /CSM/SF/SFC5-D/SFC584Q.Seq.d/                        779   0.0
SSG130 (SSG130Q) /CSM/SS/SSG1-B/SSG130Q.Seq.d/                        654   0.0
AHN423 (AHN423Q) /CSM/AH/AHN4-A/AHN423Q.Seq.d/                        628   e-179
VHQ172 (VHQ172Q) /CSM/VH/VHQ1-C/VHQ172Q.Seq.d/                        622   e-177
VHI774 (VHI774Q) /CSM/VH/VHI7-D/VHI774Q.Seq.d/                        622   e-177
VHE577 (VHE577Q) /CSM/VH/VHE5-D/VHE577Q.Seq.d/                        613   e-174
AHO854 (AHO854Q) /CSM/AH/AHO8-C/AHO854Q.Seq.d/                         42   0.017
AHN271 (AHN271Q) /CSM/AH/AHN2-C/AHN271Q.Seq.d/                         42   0.017
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42  0.10  7
CC204282|CC204282.1 CH261-17J24_Sp6.1 CH261 Gallus gallus genomic clone CH261-17J24, DNA sequence.    48  0.22  1
AL408426|AL408426.1 T3 end of clone AV0AA008D12 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    32  0.22  3
AC079561|AC079561.1 Mus musculus clone RP23-45N22, WORKING DRAFT SEQUENCE, 49 unordered pieces.    46  0.86  1
CB096615|CB096615.1 AF53-Rpf_06_E02_T7_003.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0002018 5', mRNA sequence.    36  1.4  2
CA765749|CA765749.2 AF53-Rpf_08_L07_T7_030.ab1 IRRI Drought Stress Panicle Library Oryza sativa (indica cultivar-group) cDNA clone C0002959 5' similar to unknown, mRNA sequence.    36  1.5  2
AC113927|AC113927.5 Rattus norvegicus clone CH230-38J21, WORKING DRAFT SEQUENCE, 1 ordered piece.    36  2.0  5
AL359550|AL359550.8 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-521I12.    38  3.3  2
AC135486|AC135486.2 Rattus norvegicus clone CH230-255O23, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  3.4  1
BZ971371|BZ971371.1 PUGHX75TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa388M06, DNA sequence.    44  3.4  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54B29) RecName: Full=Uncharacterized membrane protein DDB_G029...   360   5e-98
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.56  alm: 0.13  top: 0.83  tms: 0.20  mit: 0.20  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSA348 is pla
5' end seq. ID SSA348F
5' end seq. 
>SSA348F.Seq
TGCACTCTGAAGAGAGTGAACGTTCAAACAATAACAACGAAGAATCTTGTGTCTATTGTA
GTTTAATGGGTTTTGGTCCAGCTTGGACAATGTTTGTTTTCGGTTTCTTTATTCCAATGT
GTTGGATCATTGGTAGTTTCTATCTATTCTCTCCAACTCGTGTCAAATGGGTAAGTGGTC
TAATGAATTTCGTTGCTACCATCATCTTTATTTTAGCTCTCTCTTTGATGACTTTTTACG
TTCCAGAATTGGCTGCCCTTATCATTGCTCCTGCTTTAATTGTTATGGGTTTTGTAGTTT
GTATTCTAGTCGGTTTCTTTAGACAAAGAAATAGAGAAAAGAAACGTTATCTCCGTGAAA
GAATTAAGTTAATGCAAGCTGATGGTTATAAAAATTTGGCTGACCATGTTAGTAGCTTTA
GAGTTGATTACAACCAACATCAAGCAAAAGCAAATAATAATATGTTAAAGAAAAAGAAAA
AGAGAATTCAAATGGAAAAATTAAATTCACAAAGAAATTATGGTGGTATTAACACAACTG
ATAAAATAAATAATTCAAATATTAATAATATTGGTATAAATAATCCAAATAATATTCAAA
ATAATCAAATTAATAATATATTAAATAATAGTAATAATAATATTAATAAT----------
Length of 5' end seq. 650
3' end seq. ID SSA348Z
3' end seq. 
>SSA348Z.Seq
----------GTAATAATAATATTAATAATAATAATCAAGAAAGATTAAGTGACTCAAGT
AAATCCTCATTTATTGATGACTTTAAAAAATCATCAAGTAATAATCATAAGGATTTCCAT
GAAATTCCACTTCAAGAGATCATTCAAAGTATTGGTATTAAGGGTAAAAAACAATCATCA
TCATCTGCCAAAACAAGATCACTCTCTTCATCAAACTTGGTTAACTCTGTAAATTCAAAT
TTAGTAAATAGCACAAACTCAAATAATACATCAATCTTATTAAAATCTCATAATTCAAAT
AGTCCTTTATTTAATTCAACTCCAACTCCAACTAATGTTGTATTTAATTCAATTGAAGTT
TAAATGATTGAAAGAAAATGAAAAAAATAAAAANAAAATATATTTATACATAAAAAAAAA
AAAAAA
Length of 3' end seq. 416
Connected seq. ID SSA348P
Connected seq. 
>SSA348P.Seq
TGCACTCTGAAGAGAGTGAACGTTCAAACAATAACAACGAAGAATCTTGTGTCTATTGTA
GTTTAATGGGTTTTGGTCCAGCTTGGACAATGTTTGTTTTCGGTTTCTTTATTCCAATGT
GTTGGATCATTGGTAGTTTCTATCTATTCTCTCCAACTCGTGTCAAATGGGTAAGTGGTC
TAATGAATTTCGTTGCTACCATCATCTTTATTTTAGCTCTCTCTTTGATGACTTTTTACG
TTCCAGAATTGGCTGCCCTTATCATTGCTCCTGCTTTAATTGTTATGGGTTTTGTAGTTT
GTATTCTAGTCGGTTTCTTTAGACAAAGAAATAGAGAAAAGAAACGTTATCTCCGTGAAA
GAATTAAGTTAATGCAAGCTGATGGTTATAAAAATTTGGCTGACCATGTTAGTAGCTTTA
GAGTTGATTACAACCAACATCAAGCAAAAGCAAATAATAATATGTTAAAGAAAAAGAAAA
AGAGAATTCAAATGGAAAAATTAAATTCACAAAGAAATTATGGTGGTATTAACACAACTG
ATAAAATAAATAATTCAAATATTAATAATATTGGTATAAATAATCCAAATAATATTCAAA
ATAATCAAATTAATAATATATTAAATAATAGTAATAATAATATTAATAAT----------
GTAATAATAATATTAATAATAATAATCAAGAAAGATTAAGTGACTCAAGTAAATCCTCAT
TTATTGATGACTTTAAAAAATCATCAAGTAATAATCATAAGGATTTCCATGAAATTCCAC
TTCAAGAGATCATTCAAAGTATTGGTATTAAGGGTAAAAAACAATCATCATCATCTGCCA
AAACAAGATCACTCTCTTCATCAAACTTGGTTAACTCTGTAAATTCAAATTTAGTAAATA
GCACAAACTCAAATAATACATCAATCTTATTAAAATCTCATAATTCAAATAGTCCTTTAT
TTAATTCAACTCCAACTCCAACTAATGTTGTATTTAATTCAATTGAAGTTTAAATGATTG
AAAGAAAATGAAAAAAATAAAAANAAAATATATTTATACATAAAAAAAAAAAAAAA
Length of connected seq. 1066
Full length Seq ID SSA348E
Full length Seq. 
>SSA348E.Seq
TGCACTCTGAAGAGAGTGAACGTTCAAACAATAACAACGAAGAATCTTGTGTCTATTGTA
GTTTAATGGGTTTTGGTCCAGCTTGGACAATGTTTGTTTTCGGTTTCTTTATTCCAATGT
GTTGGATCATTGGTAGTTTCTATCTATTCTCTCCAACTCGTGTCAAATGGGTAAGTGGTC
TAATGAATTTCGTTGCTACCATCATCTTTATTTTAGCTCTCTCTTTGATGACTTTTTACG
TTCCAGAATTGGCTGCCCTTATCATTGCTCCTGCTTTAATTGTTATGGGTTTTGTAGTTT
GTATTCTAGTCGGTTTCTTTAGACAAAGAAATAGAGAAAAGAAACGTTATCTCCGTGAAA
GAATTAAGTTAATGCAAGCTGATGGTTATAAAAATTTGGCTGACCATGTTAGTAGCTTTA
GAGTTGATTACAACCAACATCAAGCAAAAGCAAATAATAATATGTTAAAGAAAAAGAAAA
AGAGAATTCAAATGGAAAAATTAAATTCACAAAGAAATTATGGTGGTATTAACACAACTG
ATAAAATAAATAATTCAAATATTAATAATATTGGTATAAATAATCCAAATAATATTCAAA
ATAATCAAATTAATAATATATTAAATAATAGTAATAATAATATTAATAATAATAATCAAG
AAAGATTAAGTGACTCAAGTAAATCCTCATTTATTGATGACTTTAAAAAATCATCAAGTA
ATAATCATAAGGATTTCCATGAAATTCCACTTCAAGAGATCATTCAAAGTATTGGTATTA
AGGGTAAAAAACAATCATCATCATCTGCCAAAACAAGATCACTCTCTTCATCAAACTTGG
TTAACTCTGTAAATTCAAATTTAGTAAATAGCACAAACTCAAATAATACATCAATCTTAT
TAAAATCTCATAATTCAAATAGTCCTTTATTTAATTCAACTCCAACTCCAACTAATGTTG
TATTTAATTCAATTGAAGTTTAAATGATTGAAAGAAAATGAAAAAAATAAAAANAAAATA
TATTTATACATAAAAAAAAAAAAAAA
Length of full length seq. 1046