NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA336
Library SS
(Link to library)
Clone ID SSA336
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13904-1
Original site URL
Representative seq. ID SSA336F
(Link to Original site)
Representative DNA sequence 
>SSA336 (SSA336Q) /CSM/SS/SSA3-B/SSA336Q.Seq.d/
CTACTTGGATGTTTCAAATAATATTTTATCAATTGTACCAAATAATTTGAAGGCGTTGAT
CACGTTGAATATCTCGTATAATTCAATCCAGTCATTTGGAAACGCAACTATTTTATTGCC
AGCATTGCAGGAGTTGATATACACTCATAATAAGGTGAGCATTTTCCCCACAGAGATATT
GGAGTTGCGTACCTTGAGAATATTGAATTTGGCAGGCAACCGTTTGAATTATCTCCCTGA
CGAGATCTCGCATTTGGCAGGCACATTGGTTGAGTTGAATATCTCGGATAATGTATTCAC
ATCGTTTCCAACACCAATTGCAACATTGATCAATTTGGAGACTTTATCATTATCTGGCAA
TAATCTTGGCACGTTAAGCAACAATTTCACAACACTTTCAAAATTAATTAGCATCAATTT
CAGTAATTGTTCATTGACTTCATTTGATTTCGATCTTTCACAATTAACTAACCTTCAAGA
GATTTATCTATCAGAGAATAGAATCCCTCAATTTGGTCAATTAACATGCACAAGTCTTTG
TTCAATTTTAAATACAATTAGAATTTTAGATTTATCAAATGGTGCTTTCACCCAAGTACC
AAAACAAATTGGTTGGTGTAAAAATTTAAGAAGATTATTATTAGGTCAAAATCAATTAAC
TAAAATACCTGGTGAATTATTCTTATTAAATCCATCAATTGXXXXXXXXXX
sequence update 1998. 7.19
Translated Amino Acid sequence 
YLDVSNNILSIVPNNLKALITLNISYNSIQSFGNATILLPALQELIYTHNKVSIFPTEIL
ELRTLRILNLAGNRLNYLPDEISHLAGTLVELNISDNVFTSFPTPIATLINLETLSLSGN
NLGTLSNNFTTLSKLISINFSNCSLTSFDFDLSQLTNLQEIYLSENRIPQFGQLTCTSLC
SILNTIRILDLSNGAFTQVPKQIGWCKNLRRLLLGQNQLTKIPGELFLLNPSI---
Translated Amino Acid sequence (All Frames) 
Frame A:
llgcfk*yfinctk*fegvdhveylv*fnpviwkrnyfiasiagvdihs**gehfphrdi
gvayleniefgrqpfelsp*rdlafgrhig*veylg*cihivsntncnidqfgdfiiiwq
*swhvkqqfhntfkin*hqfq*lfidfi*frsftin*psrdlsire*npsiwsinmhksl
fnfkyn*nfrfikwcfhpstktnwlv*kfkkiiirsksin*ntw*iiliksin---


Frame B:
YLDVSNNILSIVPNNLKALITLNISYNSIQSFGNATILLPALQELIYTHNKVSIFPTEIL
ELRTLRILNLAGNRLNYLPDEISHLAGTLVELNISDNVFTSFPTPIATLINLETLSLSGN
NLGTLSNNFTTLSKLISINFSNCSLTSFDFDLSQLTNLQEIYLSENRIPQFGQLTCTSLC
SILNTIRILDLSNGAFTQVPKQIGWCKNLRRLLLGQNQLTKIPGELFLLNPSI---


Frame C:
twmfqiifyqlyqii*rr*sr*isriiqsshletqlfycqhcrs*ytliir*afspqryw
scvp*ey*iwqatv*iisltrsriwqahwls*isrimyshrfqhqlqh*siwrlyhylai
ilar*atisqhfqn*lasisvivh*lhlisifhn*ltfkrfiyqrieslnlvn*haqvfv
qf*iqlef*iyqmvlspkyqnklvgvki*edyy*vkin*lkylvnysy*ihq---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA336 (SSA336Q) /CSM/SS/SSA3-B/SSA336Q.Seq.d/                       1390   0.0
AFD571 (AFD571Q) /CSM/AF/AFD5-C/AFD571Q.Seq.d/                        402   e-111
SSK606 (SSK606Q) /CSM/SS/SSK6-A/SSK606Q.Seq.d/                        398   e-110
AFO528 (AFO528Q) /CSM/AF/AFO5-B/AFO528Q.Seq.d/                        394   e-109
SFL254 (SFL254Q) /CSM/SF/SFL2-C/SFL254Q.Seq.d/                        363   2e-99
SFI551 (SFI551Q) /CSM/SF/SFI5-C/SFI551Q.Seq.d/                        281   7e-75
SFL306 (SFL306Q) /CSM/SF/SFL3-A/SFL306Q.Seq.d/                        202   5e-51
SFH778 (SFH778Q) /CSM/SF/SFH7-D/SFH778Q.Seq.d/                        180   2e-44
AFI811 (AFI811Q) /CSM/AF/AFI8-A/AFI811Q.Seq.d/                        159   7e-38
SSI283 (SSI283Q) /CSM/SS/SSI2-D/SSI283Q.Seq.d/                        153   4e-36
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AQ668406|AQ668406.1 HS_5414_A1_D08_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=990 Col=15 Row=G, DNA sequence.    38  0.41  2
AW906388|AW906388.1 EST342510 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA3I11, mRNA sequence.    46  0.58  1
AL929312|AL929312.4 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-463G15.    46  0.58  1
AC022004|AC022004.2 Homo sapiens chromosome 3p clone RP11-369J15, WORKING DRAFT SEQUENCE, 27 unordered pieces.    38  0.62  5
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38  0.69  7
Z99944|Z99944.1 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone Y42E10.    46  0.86  4
AP003494|AP003494.1 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1700D9.    38  1.1  3
AZ179425|AZ179425.1 SP_0165_B1_A02_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=165 Col=3 Row=B, genomic survey sequence.    44  2.3  1
BH441820|BH441820.1 BOHCO23TR BOHC Brassica oleracea genomic clone BOHCO23, DNA sequence.    44  2.3  1
AC096209|AC096209.7 Rattus norvegicus clone CH230-33E21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36  2.8  5
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016823_806(AE016823|pid:none) Leptospira interrogans serovar C...    87   5e-16
AE010300_873(AE010300|pid:none) Leptospira interrogans serovar l...    86   8e-16
CP001574_680(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    85   2e-15
CP001575_1(CP001575|pid:none) Micromonas sp. RCC299 chromosome 8...    84   3e-15
AE016823_805(AE016823|pid:none) Leptospira interrogans serovar C...    84   5e-15
AE010300_3318(AE010300|pid:none) Leptospira interrogans serovar ...    83   7e-15
CP001332_194(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    83   7e-15
CP000828_1962(CP000828|pid:none) Acaryochloris marina MBIC11017,...    82   1e-14
AE016823_807(AE016823|pid:none) Leptospira interrogans serovar C...    82   2e-14
AE010300_2964(AE010300|pid:none) Leptospira interrogans serovar ...    82   2e-14
protein update 2009. 6. 8
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SSA336 is nuc
5' end seq. ID SSA336F
5' end seq. 
>SSA336F.Seq
CTACTTGGATGTTTCAAATAATATTTTATCAATTGTACCAAATAATTTGAAGGCGTTGAT
CACGTTGAATATCTCGTATAATTCAATCCAGTCATTTGGAAACGCAACTATTTTATTGCC
AGCATTGCAGGAGTTGATATACACTCATAATAAGGTGAGCATTTTCCCCACAGAGATATT
GGAGTTGCGTACCTTGAGAATATTGAATTTGGCAGGCAACCGTTTGAATTATCTCCCTGA
CGAGATCTCGCATTTGGCAGGCACATTGGTTGAGTTGAATATCTCGGATAATGTATTCAC
ATCGTTTCCAACACCAATTGCAACATTGATCAATTTGGAGACTTTATCATTATCTGGCAA
TAATCTTGGCACGTTAAGCAACAATTTCACAACACTTTCAAAATTAATTAGCATCAATTT
CAGTAATTGTTCATTGACTTCATTTGATTTCGATCTTTCACAATTAACTAACCTTCAAGA
GATTTATCTATCAGAGAATAGAATCCCTCAATTTGGTCAATTAACATGCACAAGTCTTTG
TTCAATTTTAAATACAATTAGAATTTTAGATTTATCAAATGGTGCTTTCACCCAAGTACC
AAAACAAATTGGTTGGTGTAAAAATTTAAGAAGATTATTATTAGGTCAAAATCAATTAAC
TAAAATACCTGGTGAATTATTCTTATTAAATCCATCAATTG----------
Length of 5' end seq. 701
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -