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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA316
Library SS
(Link to library)
Clone ID SSA316
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01085-1
Original site URL
Representative seq. ID SSA316E
(Link to Original site)
Representative DNA sequence 
>SSA316 (SSA316Q) /CSM/SS/SSA3-A/SSA316Q.Seq.d/
CTTAAATAATGGAAGAAAGAGCTACTAATAAGTGCCCACATTCAAATTTATCCATTGAAG
AAGCTGAGGAAAATAAGAGTAAATACATGTGGCTATTAACAGATCCAGATGAATTCCCCG
AGTTTGAACCTTGTGTATGTACAACTGACTGTAAAGTAAAAATGGTAAAAATAATTGACA
TTATCCTTTATAATCATTATAAATTCTCAAGAGGTTACTTTGAAGATTGTAAAATGGTAT
TTGGTCATGGAGTGAAGGGTTTGAGCCTCTACGAATATACCAATTTTATTAAAAAAAATC
GTTTTAAAGAAAGAACCGAATTATTAACAAATCTTCAGTATATAGATGGAAAAGTTGTTA
GATTATGTGATGTGCCAAAAGAAAATGAAGAAAAAAACAAATAAAACCATCAACTATTTT
TGTTTTTATTTTAAATAAAATAAATAATATTAATAAATAAT
sequence update 1997. 7. 5
Translated Amino Acid sequence 
*IMEERATNKCPHSNLSIEEAEENKSKYMWLLTDPDEFPEFEPCVCTTDCKVKMVKIIDI
ILYNHYKFSRGYFEDCKMVFGHGVKGLSLYEYTNFIKKNRFKERTELLTNLQYIDGKVVR
LCDVPKENEEKNK*nhqlflflf*ik*iilinn
Translated Amino Acid sequence (All Frames) 
Frame A:
lk*wkkellisahiqiyplkklrkirvntcgy*qiqmnspslnlvyvqltvk*kw*k*lt
lsfiiiinsqevtlkivkwylvme*rv*astnipillkkivlkkepny*qifsi*mekll
dyvmcqkkmkkktnktinyfcfyfk*nk*y**i


Frame B:
lnngrksy**vptfkfih*rs*gk*e*ihvainrsr*iprv*tlcmyn*l*skngknn*h
ypl*sl*ilkrll*rl*ngiwswsegfeplriyqfy*kksf*rknriinkssvyrwksc*
im*cakrk*rkkqikpstifvfilnkinnink*


Frame C:
*IMEERATNKCPHSNLSIEEAEENKSKYMWLLTDPDEFPEFEPCVCTTDCKVKMVKIIDI
ILYNHYKFSRGYFEDCKMVFGHGVKGLSLYEYTNFIKKNRFKERTELLTNLQYIDGKVVR
LCDVPKENEEKNK*nhqlflflf*ik*iilinn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA316 (SSA316Q) /CSM/SS/SSA3-A/SSA316Q.Seq.d/                        696   0.0
SSB276 (SSB276Q) /CSM/SS/SSB2-D/SSB276Q.Seq.d/                        521   e-147
SLA275 (SLA275Q) /CSM/SL/SLA2-D/SLA275Q.Seq.d/                        246   2e-64
AFN117 (AFN117Q) /CSM/AF/AFN1-A/AFN117Q.Seq.d/                        111   9e-24
SSL494 (SSL494Q) /CSM/SS/SSL4-D/SSL494Q.Seq.d/                         38   0.11
SSD214 (SSD214Q) /CSM/SS/SSD2-A/SSD214Q.Seq.d/                         38   0.11
VHH806 (VHH806Q) /CSM/VH/VHH8-A/VHH806Q.Seq.d/                         36   0.45
SSC307 (SSC307Q) /CSM/SS/SSC3-A/SSC307Q.Seq.d/                         36   0.45
VHG515 (VHG515Q) /CSM/VH/VHG5-A/VHG515Q.Seq.d/                         34   1.8
VFJ526 (VFJ526Q) /CSM/VF/VFJ5-B/VFJ526Q.Seq.d/                         34   1.8
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U63608|U63608.1 Dictyostelium discoideum Tdd-4 transposable element flanking sequence, clone p435 right end.   159  7e-54  3
CC270836|CC270836.1 CH261-67I12_RM1.1 CH261 Gallus gallus genomic clone CH261-67I12, DNA sequence.    36  0.34  2
AC107689|AC107689.4 Mus musculus clone RP24-283F19, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44  1.5  1
AC115033|AC115033.3 Mus musculus clone RP24-269A7, WORKING DRAFT SEQUENCE, 9 ordered pieces.    44  1.5  1
AC011414|AC011414.4 Homo sapiens chromosome 5 clone CTB-83D3, complete sequence.    42  1.7  4
AC116089|AC116089.6 Rattus norvegicus clone CH230-344O11, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  3.4  6
BI842323|BI842323.1 fq85h02.x1 Zebrafish neuronal Danio rerio cDNA clone 4887027 3', mRNA sequence.    38  4.8  2
BI842518|BI842518.1 fq85h02.y1 Zebrafish neuronal Danio rerio cDNA clone 4887027 5', mRNA sequence.    38  5.2  2
AC137902|AC137902.3 Mus musculus clone RP23-372O9, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  5.6  3
AZ188194|AZ188194.1 SP_1011_B1_F02_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=1011 Col=3 Row=L, genomic survey sequence.    42  5.8  1
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_62(AC117081|pid:none) Dictyostelium discoideum chromoso...    53   4e-06
CP000849_1102(CP000849|pid:none) Rickettsia bellii OSU 85-389, c...    33   3.1
CP000087_361(CP000087|pid:none) Rickettsia bellii RML369-C, comp...    33   3.1
CU928171_304(CU928171|pid:none) Kluyveromyces thermotolerans str...    32   6.9
AM743169_4065(AM743169|pid:none) Stenotrophomonas maltophilia K2...    32   9.0
protein update 2009. 7. 5
PSORT 

 psg: 0.77  gvh: 0.31  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA316 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSA316E
Full length Seq. 
>SSA316E.Seq
CTTAAATAATGGAAGAAAGAGCTACTAATAAGTGCCCACATTCAAATTTATCCATTGAAG
AAGCTGAGGAAAATAAGAGTAAATACATGTGGCTATTAACAGATCCAGATGAATTCCCCG
AGTTTGAACCTTGTGTATGTACAACTGACTGTAAAGTAAAAATGGTAAAAATAATTGACA
TTATCCTTTATAATCATTATAAATTCTCAAGAGGTTACTTTGAAGATTGTAAAATGGTAT
TTGGTCATGGAGTGAAGGGTTTGAGCCTCTACGAATATACCAATTTTATTAAAAAAAATC
GTTTTAAAGAAAGAACCGAATTATTAACAAATCTTCAGTATATAGATGGAAAAGTTGTTA
GATTATGTGATGTGCCAAAAGAAAATGAAGAAAAAAACAAATAAAACCATCAACTATTTT
TGTTTTTATTTTAAATAAAATAAATAATATTAATAAATAAT
Length of full length seq. 461